Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4584
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321289-1|AAG46059.1|  744|Drosophila melanogaster SKELETOR pro...    29   7.2  
AE014297-4158|AAF56734.3| 3298|Drosophila melanogaster CG18437-P...    29   7.2  
AE014297-1166|AAO41539.1|  744|Drosophila melanogaster CG33676-P...    29   7.2  
AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-P...    29   9.5  
AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-P...    29   9.5  

>AF321289-1|AAG46059.1|  744|Drosophila melanogaster SKELETOR
           protein.
          Length = 744

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 567 WTSRSRHVTDTRPSAGDGHRK 505
           WT RSR  T   P+AG+ HR+
Sbjct: 15  WTQRSRLRTPRNPAAGESHRR 35


>AE014297-4158|AAF56734.3| 3298|Drosophila melanogaster CG18437-PA
            protein.
          Length = 3298

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 700  RSLPGQLVEIKNIN*KHLSSKTKITQILRSSIIEQKRGRHTRSTVDESE 554
            ++ P +L  + ++  +H S +T  T +   S  E   G HTRS +  S+
Sbjct: 3151 KAQPPKLRFVSSVEFRHSSGETSTTPLSPESPAEDSSGDHTRSRLQRSK 3199


>AE014297-1166|AAO41539.1|  744|Drosophila melanogaster CG33676-PA,
           isoform A protein.
          Length = 744

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 567 WTSRSRHVTDTRPSAGDGHRK 505
           WT RSR  T   P+AG+ HR+
Sbjct: 15  WTQRSRLRTPRNPAAGESHRR 35


>AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-PD,
            isoform D protein.
          Length = 7210

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 685  QLVEIKNIN*KHLSSKTKITQILRSSIIEQKRGRHTRSTVDE 560
            Q  EIK+   KH  SK    + +    +E K+ + T S +DE
Sbjct: 3472 QKEEIKDSEAKHKKSKVSEKKSIEEEKLEDKKEKQTESAIDE 3513


>AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-PA,
            isoform A protein.
          Length = 9270

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 685  QLVEIKNIN*KHLSSKTKITQILRSSIIEQKRGRHTRSTVDE 560
            Q  EIK+   KH  SK    + +    +E K+ + T S +DE
Sbjct: 3472 QKEEIKDSEAKHKKSKVSEKKSIEEEKLEDKKEKQTESAIDE 3513


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,606,963
Number of Sequences: 53049
Number of extensions: 637205
Number of successful extensions: 1503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)