Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4584
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical...    29   3.7  
Z70682-1|CAA94584.1|  363|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical
           protein F52C6.14 protein.
          Length = 779

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -2

Query: 709 EALRSLPGQLVEIKNIN*KHLSSKTKITQILRSSIIEQ----KRGRHTRSTVDESEPTRD 542
           E    LPG +V++KN   ++L+  +  T + R+   +Q    ++  H  ST+   E T+ 
Sbjct: 628 EGAEELPGNVVKVKNFLKEYLAESSTPTLVERADSRDQPLTARQSMHMESTLKVREKTKR 687

Query: 541 R 539
           R
Sbjct: 688 R 688


>Z70682-1|CAA94584.1|  363|Caenorhabditis elegans Hypothetical
           protein F08G5.2 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -3

Query: 570 LWTSRSRHVTDTRPSAGDGHRKIDVLFSEENHRDEINKQTFRRNICLYIITMNCNLIYKN 391
           LW+S   +  D+ P     H++   L S   H D I  +   R +CLY       LI K 
Sbjct: 144 LWSSYGNYFIDSVPP----HKRAQTLHSLRRHFDRIYHEVDLRWLCLYPEGSRLFLIQKR 199

Query: 390 ES 385
            S
Sbjct: 200 NS 201


>U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical
           protein C08A9.9 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 390 ESVQCMYMYNSRTPATDWIILFCCIFLWSGEGS*ERKLRTKF 265
           E   C + +N R     WI++   ++  +GE   ER+LR  F
Sbjct: 41  EKYPCFWQHNVRGSLDQWILVRAEVYEQTGEVVPERELREMF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,453
Number of Sequences: 27780
Number of extensions: 361127
Number of successful extensions: 943
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)