Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4578
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 29 0.18
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 29 0.18
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 27 0.56
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 1.3
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 24 5.2
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 24 5.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 24 5.2
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 24 5.2
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 24 5.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 5.2
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 24 6.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 24 6.8
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 24 6.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 9.0
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 23 9.0
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 29.1 bits (62), Expect = 0.18
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 66 HEREFGTIDGDNKPIWQVAEEREENKHLQKENAPYGE 176
HE +DG+NKPI VA +NK ++NA +GE
Sbjct: 101 HEITKAQLDGENKPI-SVAS--YQNKFTSEDNASFGE 134
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 29.1 bits (62), Expect = 0.18
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +3
Query: 27 EAETLYKQVLTRAHEREFGTIDGDNKPIWQVAEEREENKHLQKENAPYGEYGGWHKAAKV 206
E Y + L + T+ D+ P+W + + N L+++N +Y K V
Sbjct: 91 EISPYYTKALPQGFSFHPVTLTSDH-PLWSILPDEVRNSLLERKNVMAFDYEQVKKFVSV 149
Query: 207 DSPT 218
D PT
Sbjct: 150 DQPT 153
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.5 bits (58), Expect = 0.56
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 307 VPGPPSRVSAASYLPWRRYSAPRF 236
+ PP+RVS S P +R+ AP F
Sbjct: 50 IRSPPTRVSIESITPKQRFPAPNF 73
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 66 HEREFGTIDGDNKPIWQVAEEREENKH----LQKENAPYGEY 179
HER++ +ID + + EE E+NKH LQKEN E+
Sbjct: 286 HERKYVSID----ELDAILEENEKNKHLINILQKENKRVFEF 323
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 181 PYSPYGAFSFCKCLFSSRSSATCQMGLLSPSMVPNS 74
PYSP + K L+ +S + LL+P V NS
Sbjct: 109 PYSPKQTHTVLKRLYDRQSVISDHEKLLTPQNVSNS 144
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 60 ASTPACRESRLPCICPSCR 4
AST +CR + L +C +CR
Sbjct: 153 ASTLSCRATALHLVCRNCR 171
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 331 TTHYRANWVPGPPSRVSAASYLPWRRYSAPRFFSVVVTVG 212
++H A W G + S+ S LP +P+F V +G
Sbjct: 455 SSHNSAEWASGETTGHSSNSPLPGSDMFSPQFMRVGTAMG 494
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -2
Query: 99 CHRQWFRILV--HEPASTPACRESRLPCICPSCR 4
C R+W + +E A P + S L IC CR
Sbjct: 16 CCRRWIDCIECHNEIADHPLLKTSELTLICKKCR 49
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 88 LTVTISPSGKW 120
L+VT+SP GKW
Sbjct: 516 LSVTVSPDGKW 526
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 123 EEREENKHLQKENAPYGEYGG 185
EE+E+ K K+NA G+ GG
Sbjct: 1808 EEKEKQKQKAKKNAESGKKGG 1828
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 298 PPSRVSAASYLPWRRYSAPRFFSVVVTV 215
P ++++ A WR+ FFSVV TV
Sbjct: 91 PIAKIADADINEWRKLFDINFFSVVETV 118
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 104 LIVTVNGSEFSFMSPRQHLLVESL 33
L +++ F F +PR HLL+E L
Sbjct: 573 LCSSLSSPRFLFRNPRNHLLLEYL 596
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 206 GLSDSDHNAEEPGRAVPAPGQVRGRRDPRGG 298
G S ++ PG P + RGRRD RGG
Sbjct: 433 GSSRGGYHGRNPGG--PNRQRYRGRRDGRGG 461
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 140 QALAEGERPVRRVRRLAQGRQGGL 211
QAL + RP++ +R +G++G L
Sbjct: 319 QALQKSGRPLKSIRARLKGKEGRL 342
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 210 SPTVTTTLKNLGALYRRQ 263
SPT TT L+ + +LYR Q
Sbjct: 5 SPTRTTNLQRIRSLYRLQ 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,276
Number of Sequences: 5004
Number of extensions: 24243
Number of successful extensions: 82
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -