Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4577
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0527 - 15025031-15025993 29 2.3
05_03_0524 + 14994170-14995132 29 2.3
01_06_1749 - 39636951-39638102 29 3.0
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 28 5.2
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 28 5.2
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716... 28 5.2
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101... 27 6.9
05_03_0625 - 16325827-16326495 27 6.9
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080... 27 6.9
12_02_0091 - 13498143-13498499,13499005-13499301 27 9.1
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731... 27 9.1
03_02_0545 + 9373344-9374963 27 9.1
>05_03_0527 - 15025031-15025993
Length = 320
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 364 KVSSIVTTAAPPFKPKRITASWQK*AGWW 278
+ S+ ++ ++PPFKP R+ W G W
Sbjct: 124 RCSTPLSPSSPPFKPSRVIVRWWAPPGGW 152
>05_03_0524 + 14994170-14995132
Length = 320
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 364 KVSSIVTTAAPPFKPKRITASWQK*AGWW 278
+ S+ ++ ++PPFKP R+ W G W
Sbjct: 124 RCSTPLSPSSPPFKPSRVIVRWWAPPGGW 152
>01_06_1749 - 39636951-39638102
Length = 383
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 358 SSIVTTAAPPFKPKRITA 305
SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 519 DSL*GELGTGPPLEFFLLLGWTSSQPTWC*MVTGAHRH 406
+SL LGT P L G T+S P W +++ RH
Sbjct: 136 ESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRH 173
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 519 DSL*GELGTGPPLEFFLLLGWTSSQPTWC*MVTGAHRH 406
+SL LGT P L G T+S P W +++ RH
Sbjct: 136 ESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRH 173
>04_03_0988 -
21469811-21469831,21470823-21471047,21471327-21471634,
21471864-21472234,21472327-21472430,21473086-21473325
Length = 422
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 440 PGVKWLLEPIDIYNVNAPPTLRYKF*GLKYSYNGCPTLQTETH 312
P + L EPI + VNA +Y+ G KY +G PTL H
Sbjct: 86 PVLAGLSEPIIVAKVNAD---KYRKLGSKYGVDGFPTLMLFIH 125
>07_01_0139 -
1014952-1015165,1015271-1015350,1015420-1015629,
1015925-1016044,1016650-1016709,1017129-1017204,
1018189-1018352,1018428-1018490,1018815-1018902,
1018997-1019647,1019965-1020449
Length = 736
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 385 PPYDISSKVSSIVTTAAPPFKPKRITASWQK 293
PP I+S +SIV +AP + + WQK
Sbjct: 331 PPGAINSMQTSIVNQSAPKVEMPSVAGQWQK 361
>05_03_0625 - 16325827-16326495
Length = 222
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 385 PPYDISSKVSSIVTTAAPPFKPKRITASW-QK*AGWWYLS 269
PP + + S+ ++ ++PPF P R+ W GW L+
Sbjct: 21 PPPPAAPRCSTALSPSSPPFHPTRLRIRWAPPPVGWCKLN 60
>01_05_0057 +
17705023-17705143,17706186-17706538,17708002-17708044,
17708698-17709140
Length = 319
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 84 FRNSIGGNPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKKK 215
F N+ G P++ F S EY N ++ F F L + R K
Sbjct: 68 FHNNQPGKPKVTFEGSQEEYKDNDGVLFFDGETFRLERLHRAVK 111
>12_02_0091 - 13498143-13498499,13499005-13499301
Length = 217
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -2
Query: 385 PPYDISSKVS-SIVTTAAPPF 326
PPY S+ +S S+ TTAAPPF
Sbjct: 100 PPYSSSTLLSHSLHTTAAPPF 120
>05_07_0098 +
27672298-27672561,27672617-27672705,27673111-27673159,
27673217-27673304,27673891-27674020,27674790-27675366
Length = 398
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 341 RCNYT*DLRTYIVRWVAHLRCRCL 412
RC T LR RW HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324
>03_02_0545 + 9373344-9374963
Length = 539
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 500 WVPGPPSSFFYCLDGRAHSPPGVKWLLEPIDIYNVNAPPTLR 375
++P PP F CL A +PP + P+D PP L+
Sbjct: 40 FLPPPPGPFRRCLHAAAAAPPDINL---PLDADPSPPPPALQ 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,053
Number of Sequences: 37544
Number of extensions: 306968
Number of successful extensions: 617
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -