Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4576
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 32 0.35
AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical ... 30 1.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 3.3
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 3.3
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 3.3
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 29 4.3
Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 28 5.7
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 28 5.7
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 28 5.7
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 5.7
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 7.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 7.6
AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm rec... 28 7.6
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 28 7.6
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 337 GLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQ 498
G G RQ N E + V E NP N P AT +GP+ P + P+ +Q
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPM-PPLNGTAPLPSGQQ 747
>AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical
protein Y116A8A.4 protein.
Length = 441
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 247 AKNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYR------QDNGEWTVTEFVNENGNPV 408
A NGV D KLGD ++F+ Y D L ++ +D G T T + E G P+
Sbjct: 181 AFNGVPCLADETTSSKLGDVVHFYGYSDYDLLHHKLLIKAVKDGGICTETYYTEEVGGPL 240
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 340 LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQT 501
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2225
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 340 LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQT 501
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2298
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 385 VNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRP 492
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2324
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 385 VNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRP 492
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 385 VNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRP 492
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 358 NGEWTVTEFVNENGNPVDVANPPVATSTTGP 450
N EWTV EF ++ GN D N + + P
Sbjct: 47 NWEWTVNEFWDQTGNVADNLNGTITWLRSNP 77
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 385 VNENGNPVDVANPPVATSTTGPLQTPQQ 468
VN N PV A PPV P Q PQQ
Sbjct: 415 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 442
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 385 VNENGNPVDVANPPVATSTTGPLQTPQQ 468
VN N PV A PPV P Q PQQ
Sbjct: 401 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 428
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 385 VNENGNPVDVANPPVATSTTGPLQTPQQ 468
VN N PV A PPV P Q PQQ
Sbjct: 404 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 431
>Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical
protein F58G11.3a protein.
Length = 666
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 382 FVNENGNPVDVANPPVATSTTGPLQTPQQAST 477
F +G+ + NPPVA S PL P AS+
Sbjct: 191 FGKSSGSNANPTNPPVAPSIQRPLMRPSTASS 222
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 416 PTHLWPHLPRVHCRHPNKPALLSLDRNRRAKRQKQW 523
P HLW +P+ HP+K +L+++ R W
Sbjct: 433 PPHLWEGIPKNTIFHPSKSKVLNMETCTEWTRVLSW 468
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 416 PTHLWPHLPRVHCRHPNKPALLSLDRNRRAKRQKQW 523
P HLW +P+ HP+K +L+++ R W
Sbjct: 433 PPHLWEGIPKNTIFHPSKSKVLNMETCTEWTRVLSW 468
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 424 PVATSTTGPLQTP-QQASTPIVRPEQ 498
PVAT T GP+ TP +Q +V P+Q
Sbjct: 225 PVATYTQGPVPTPVEQVVETVVEPQQ 250
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 412 VANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQG 531
V NPPV++ST+G T AS+ T T+ QG
Sbjct: 861 VTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQG 900
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 424 PVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLIFSD 570
PV STT P TP S+P + + + + Q G+ + SD
Sbjct: 1165 PVCISTTTPSSTPSSTSSPTLPSGSSTEYTPRATQSSTTTSYGSTLSSD 1213
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 364 EWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPI-VRPEQTCQTSE 516
E T TE GNP NP T+T P T + +T + EQT T E
Sbjct: 555 EVTTTEEPANTGNPPTTENP---TTTEQPTSTAESTTTALPFTTEQTVTTEE 603
>AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm
receptor protein 63 protein.
Length = 336
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 520 VVQGRDKICKGTLIFSDEFEKNSLKDLTSWGAEVRFPEEPDYPFNVYTTDGTIGFDSGSL 699
V+ G + TLI D+ ++L+ L ++ E P Y Y DG++ + + L
Sbjct: 139 VIGGFFAVMVETLIAKDKMLDDNLRKLIFENYQLLISELPKYNITPYNLDGSVNWGNFGL 198
Query: 700 II 705
++
Sbjct: 199 LV 200
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 409 DVANPPVATSTTGPLQTPQQASTPIVRPEQTC 504
D+ + PV TS+ P TP+ + P PE TC
Sbjct: 340 DIEDLPVTTSS--PATTPKPTAKPTTAPECTC 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,410,441
Number of Sequences: 27780
Number of extensions: 382561
Number of successful extensions: 1227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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