Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4573
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 32 0.091
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 29 0.64
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 3.4
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 4.5
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.0
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 6.0
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 7.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.9
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 31.9 bits (69), Expect = 0.091
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 58 RIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLS--SQSRSAHIVTTSPN 231
RIARA ++I N +D ++D G + +D+ Y Y +L+ ++ I+ P+
Sbjct: 320 RIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEY-YTFLTGCKNPKACTILLRGPS 378
Query: 232 GGVTGALERVLSRYMEVTVSTHAVDKREP 318
+ +ER L M V + K P
Sbjct: 379 KDIINEVERNLQDAMAVARNVFFHPKLSP 407
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 115 EDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHIVTTSPNGGVTGALERVL 264
ED LYD+ LN+DEA+ Y S S+H + SP+ + + E +L
Sbjct: 210 EDENLYDE-LNLDEASASYDAERSGRSSSSSH--SPSPSASSSSSSENLL 256
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 130 YDDVLNVDEAAIRYWYNYLSSQSRSAHIVTTSPNG 234
YD N+DE I W + LS ++ + +T NG
Sbjct: 87 YDKFFNIDEVPITTW-DALSQHTKGPYELTVKENG 120
>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 122
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 361 YSVKPAVFDLIL-TLAIVCYLAVVYFA 438
Y PAV D I+ ++A+VC + ++YF+
Sbjct: 71 YCELPAVADAIINSIALVCIIVILYFS 97
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 73 LASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHIV 216
L H N ED +V + E +R +Y Y+SSQ S+HI+
Sbjct: 102 LTQHYINGWYKHVSEDPSFIREVQSTIEYIMRQFYAYVSSQ-ESSHII 148
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 6.0
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Frame = +1
Query: 55 ARIARALASHIYNITDDENDEDAGL---YDD--VLNVDEAAIRYWYNYLSSQSRSAHIVT 219
AR A L+ ++ DDE+D+D G ++D + +D RY S H+ +
Sbjct: 313 ARRASHLSEGKWDEIDDEDDDDWGSTIEFEDGTTVVIDAKTRRYEPVKRQDTLASNHVPS 372
Query: 220 TSPNGGVTGALERVLSRYMEVTVSTH------AVDKREPEYTLYSPTSA 348
N V+ A + E +++ H AV EP Y +PTSA
Sbjct: 373 APSNESVSSAAPSKIPVPEEASINEHSNITDEAVSLPEPVYP-NAPTSA 420
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 250 LERVLSRYMEVTVSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAIVC 414
L V S + T+S + YT+++P S Y Y P F + + C
Sbjct: 230 LRSVKSLKVYKTISPLHTQSTDKLYTIWTPFSELHYFYCATPITFSIASKILSCC 284
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 94 ITDDENDEDAGLYDDVLNVDEAAIRYW--YNYLSSQSRSAHIVTTS 225
+T+D +AGL D ++V+E + + N L SQ S +TTS
Sbjct: 466 VTEDNGSPNAGLDADNVDVEEVVNQRYPDLNELESQLTSHTNITTS 511
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 348 HLVRLQR*AGGLRSHSNISDSLL--FSCSLFRDTSLPAFL 461
HLVR + L SHS++SD++L ++C R+ L F+
Sbjct: 80 HLVRARHKQVALHSHSSLSDTVLECYNCGT-RNVFLLGFI 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,934
Number of Sequences: 5004
Number of extensions: 49933
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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