Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4573
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11...    45   7e-05
10_01_0261 - 2739622-2739664,2739780-2739878,2739934-2740008,274...    29   2.7  
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318...    28   6.2  
07_03_1349 + 25951445-25951774,25953301-25953639                       28   6.2  

>08_01_0016 -
           109152-109214,109296-109385,109853-109954,110046-110213,
           110510-110530,110836-110896,110987-111099,112125-112202,
           112294-112434,112532-112696,112776-112868,113096-113162,
           113285-113388,113896-114041,114303-114579
          Length = 562

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
 Frame = +1

Query: 82  HIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHIVTTSPNGGVTGALERV 261
           HIY +     D  A   +  L ++   I+ W + LS   R A  +    N     AL++ 
Sbjct: 424 HIYGLKGKNIDVFAE--NSSLAINPHYIQSWLDLLSRTPRVAPFL--QKNDPFIAALKKE 479

Query: 262 LSRYM-EVTVSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAIVCYLAVVY 432
           LS +  +V V +  +D     +T Y  T ATL VY V    FDL+  L I  YL +++
Sbjct: 480 LSEHTADVHVQSDVLDGM---FTFYDATKATLNVYQVASVTFDLLFLLVIGSYLIILF 534


>10_01_0261 -
           2739622-2739664,2739780-2739878,2739934-2740008,
           2740095-2740166,2741490-2741651,2742795-2742869,
           2742992-2743063,2743295-2743318,2743396-2743481
          Length = 235

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 414 TNYR*C*NEIEDRRLNAVNVQGGASG*VQSILRLSFID 301
           TN R C  + + RRL++  + G  SG +QS+  L ++D
Sbjct: 25  TNARHCWPQWDCRRLSSFGLSGTLSGDIQSLSELQYLD 62


>12_01_0403 -
           3185897-3186931,3187200-3187311,3187425-3187735,
           3188112-3188324,3188834-3189052
          Length = 629

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 124 GLYDDVLNVDEAAIRYWYNYL 186
           GL+ D LN+D A + +W  YL
Sbjct: 217 GLFADALNLDVAKVNFWDKYL 237


>07_03_1349 + 25951445-25951774,25953301-25953639
          Length = 222

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 217 TTSPNGGVTGALERVLSRYMEVTVSTHAVDKREPEYTLYSPTSATLY 357
           + S +GG+   L+  L RY     S+ A    +    +YSP SA +Y
Sbjct: 43  SASSSGGMDLGLDDSLLRYRRACFSSAATTDLDHRLLVYSPQSAPVY 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,515
Number of Sequences: 37544
Number of extensions: 308672
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)