Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4573
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019091-1|AAH19091.2| 563|Homo sapiens nicalin homolog (zebraf... 90 6e-18
BC013283-1|AAH13283.2| 563|Homo sapiens nicalin homolog (zebraf... 90 6e-18
BC010064-1|AAH10064.2| 563|Homo sapiens nicalin homolog (zebraf... 90 6e-18
BC008920-1|AAH08920.2| 350|Homo sapiens NCLN protein protein. 90 6e-18
BC007275-1|AAH07275.1| 273|Homo sapiens NCLN protein protein. 90 6e-18
AK172848-1|BAD18812.1| 563|Homo sapiens protein ( Homo sapiens ... 90 6e-18
CR533566-1|CAG38597.1| 552|Homo sapiens LOC56926 protein. 90 8e-18
BC025926-1|AAH25926.1| 551|Homo sapiens NCLN protein protein. 86 1e-16
BC003076-1|AAH03076.2| 163|Homo sapiens NCLN protein protein. 86 1e-16
AL365369-1|CAB96945.1| 62|Homo sapiens R31341_1 hypothetical p... 53 1e-06
AC005331-1|AAC27667.1| 70|Homo sapiens R31341_1 protein. 48 4e-05
Y08639-1|CAA69929.1| 459|Homo sapiens nuclear orphan receptor R... 31 5.2
>BC019091-1|AAH19091.2| 563|Homo sapiens nicalin homolog
(zebrafish) protein.
Length = 563
Score = 90.2 bits (214), Expect = 6e-18
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 409 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 468
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 469 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 526
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 527 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 563
>BC013283-1|AAH13283.2| 563|Homo sapiens nicalin homolog
(zebrafish) protein.
Length = 563
Score = 90.2 bits (214), Expect = 6e-18
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 409 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 468
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 469 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 526
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 527 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 563
>BC010064-1|AAH10064.2| 563|Homo sapiens nicalin homolog
(zebrafish) protein.
Length = 563
Score = 90.2 bits (214), Expect = 6e-18
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 409 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 468
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 469 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 526
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 527 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 563
>BC008920-1|AAH08920.2| 350|Homo sapiens NCLN protein protein.
Length = 350
Score = 90.2 bits (214), Expect = 6e-18
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 196 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 255
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 256 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 313
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 314 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 350
>BC007275-1|AAH07275.1| 273|Homo sapiens NCLN protein protein.
Length = 273
Score = 90.2 bits (214), Expect = 6e-18
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 119 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 178
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 179 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 236
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 237 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 273
>AK172848-1|BAD18812.1| 563|Homo sapiens protein ( Homo sapiens
cDNA FLJ24009 fis, clone KAT07785. ).
Length = 563
Score = 90.2 bits (214), Expect = 6e-18
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 409 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 468
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 469 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 526
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 527 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 563
>CR533566-1|CAG38597.1| 552|Homo sapiens LOC56926 protein.
Length = 552
Score = 89.8 bits (213), Expect = 8e-18
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 398 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQL 457
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 458 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 515
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y +++ K K Q
Sbjct: 516 LLAVGIAAYLGMAYVAVQHFSLLYRTVQRLLV-KAKTQ 552
>BC025926-1|AAH25926.1| 551|Homo sapiens NCLN protein protein.
Length = 551
Score = 85.8 bits (203), Expect = 1e-16
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 398 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQM-IQQEQLDSVMDWLTNQPRAAQL 456
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 457 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 514
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 515 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 551
>BC003076-1|AAH03076.2| 163|Homo sapiens NCLN protein protein.
Length = 163
Score = 85.8 bits (203), Expect = 1e-16
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 34 QNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQSRSAHI 213
+ L N IA AL IYN+T+ D ++ + + + + + ++L++Q R+A +
Sbjct: 10 KTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQM-IQQEQLDSVMDWLTNQPRAAQL 68
Query: 214 VTTSPNGGVTGALERVLSRYMEVTVSTHA-VDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
V + LE LSRY++ H DKR+PE+ Y + Y VKPAVFDL
Sbjct: 69 V--DKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDL 126
Query: 391 ILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTKVQ 504
+L + I YL + Y A+Q F Y+ +++ K K Q
Sbjct: 127 LLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KAKTQ 163
>AL365369-1|CAB96945.1| 62|Homo sapiens R31341_1 hypothetical
protein protein.
Length = 62
Score = 52.8 bits (121), Expect = 1e-06
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +1
Query: 316 PEYTLYSPTSATLYVYSVKPAVFDLILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKT 495
PE+ Y + Y VKPAVFDL+L + I YL + Y A+Q F Y+ +++ K
Sbjct: 1 PEFVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLV-KA 59
Query: 496 KVQ 504
K Q
Sbjct: 60 KTQ 62
>AC005331-1|AAC27667.1| 70|Homo sapiens R31341_1 protein.
Length = 70
Score = 47.6 bits (108), Expect = 4e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 313 EPEYTLYSPTSATLYVYSVKPAVFDLILTLAIVCYLAVVYFAIQ 444
+PE+ Y + Y VKPAVFDL+L + I YL + Y A+Q
Sbjct: 1 DPEFVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAYVAVQ 44
>Y08639-1|CAA69929.1| 459|Homo sapiens nuclear orphan receptor
ROR-beta protein.
Length = 459
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 16 RLKHRIQNLVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAIRYWYNYLSSQ 195
RL+ + Q R+AR +S I N + N+E +G Y + +D +YN +S Q
Sbjct: 103 RLQEQRQEQSGEAERLARVYSSSISNGLSNLNNETSGTYANGSVIDLPKSEGYYNVVSGQ 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,332,264
Number of Sequences: 237096
Number of extensions: 1682274
Number of successful extensions: 3513
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3513
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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