Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4573
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-13|CAN86915.1|  563|Caenorhabditis elegans Hypothetical p...    36   0.037
Z81586-12|CAB04692.1|  557|Caenorhabditis elegans Hypothetical p...    36   0.037
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF016679-5|AAB66157.1|  485|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z81586-13|CAN86915.1|  563|Caenorhabditis elegans Hypothetical
           protein T05F1.1b protein.
          Length = 563

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
 Frame = +1

Query: 40  LVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAI---RYWYNYLSSQSRSAH 210
           L+ N+  I  A+  +I ++ +     D+ +  +   + + A+   R  +      SR   
Sbjct: 412 LIDNIRLIGEAVLGYILDLPESGPSSDSRVKSEATMLSKDAVDKQRVHHFIRQFASRPRP 471

Query: 211 IVTTSPNGGVTGALERVLSRYMEVTVSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
           +        +T  L  V + Y  V  S   +   +     +  T   L    VKPAVF+L
Sbjct: 472 VGDQRATESITSNLASVAAGYGNVFKSAVTITDAKA----FGVTQNRLVAERVKPAVFEL 527

Query: 391 ILTLAIVCYLAVVYF 435
           ++   +  YL+  Y+
Sbjct: 528 VIAAGVFTYLSAFYY 542


>Z81586-12|CAB04692.1|  557|Caenorhabditis elegans Hypothetical
           protein T05F1.1a protein.
          Length = 557

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
 Frame = +1

Query: 40  LVSNVARIARALASHIYNITDDENDEDAGLYDDVLNVDEAAI---RYWYNYLSSQSRSAH 210
           L+ N+  I  A+  +I ++ +     D+ +  +   + + A+   R  +      SR   
Sbjct: 406 LIDNIRLIGEAVLGYILDLPESGPSSDSRVKSEATMLSKDAVDKQRVHHFIRQFASRPRP 465

Query: 211 IVTTSPNGGVTGALERVLSRYMEVTVSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDL 390
           +        +T  L  V + Y  V  S   +   +     +  T   L    VKPAVF+L
Sbjct: 466 VGDQRATESITSNLASVAAGYGNVFKSAVTITDAKA----FGVTQNRLVAERVKPAVFEL 521

Query: 391 ILTLAIVCYLAVVYF 435
           ++   +  YL+  Y+
Sbjct: 522 VIAAGVFTYLSAFYY 536


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 325 TLYSPTSATL-YVYSVKPAVFDLILTLAIVCYLAVVYFAIQAFPRFYEEY 471
           TL SP+  T+ ++Y    A+FDLI    I+ +  +V     AF  +Y  Y
Sbjct: 74  TLRSPSLQTVPFMYIKSLAIFDLIALTMILIHYCLVSTTKMAFVMYYTTY 123


>AF016679-5|AAB66157.1|  485|Caenorhabditis elegans Hypothetical
           protein T28C12.2 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 328 LYSPTSATLYVYSVKPAVFDLILTLAIVCYLAVVYFAIQAFPRFYEEYAKIVTGKTK 498
           +++P  A  Y  S+ P VF++   +A +  L      +  +  F E YA IVT + K
Sbjct: 183 VFTPLGA--YGISIGPIVFNMFTVVAYLMALICFLSCVVIYFLFEESYAGIVTKEEK 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,045
Number of Sequences: 27780
Number of extensions: 276517
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)