Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4571
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    69   7e-13
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    30   0.41 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.72 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.9  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    27   2.9  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   8.9  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   8.9  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 40/137 (29%), Positives = 67/137 (48%)
 Frame = +2

Query: 38  RVNKLGNEKHVILEQVIYAALDCHMYCIAMLCLVMLSNEFPGSLRVMKLKAAVLEAEEKF 217
           ++ K  +E   + ++V  AAL      +A  C   L++ F  S RV  L    LEA    
Sbjct: 28  KLGKYKDEIWDVYQKVFIAALTTGETVLAKKCWNRLNDRFHKSPRVEGLYGMFLEATASE 87

Query: 218 DEALELLDNIIKVDETNSXXXXXXXXXXXXQGYIVEAIKELVDYLKKFMSDVEAWQELCN 397
            +A+   ++ +  D T++             G   E I+ L++YL  F +D+EAW EL +
Sbjct: 88  KDAMSYYNSKLSEDPTHTVIYKRKLALLRSMGQTKECIQGLINYLDTFYNDLEAWAELAD 147

Query: 398 LYLQVQDYSRAVFCAEE 448
           +Y+ V+ +  A+FC EE
Sbjct: 148 IYVSVEAFESAIFCYEE 164


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 355 KVYVRCGSLARALQPVPSGSGLLSCRVLRR 444
           KV  +CGS+   L P P G+GL++  V +R
Sbjct: 156 KVSGKCGSVTVRLVPAPRGAGLVAAPVTKR 185


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 656  VASPRKCGKLCHWAQSKATKQLSRQVTVPD 745
            V SP  C K     Q K   Q ++ +TVPD
Sbjct: 1089 VGSPENCEKAKEMIQEKVASQYTQMITVPD 1118


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 34   RKSKQTWKRETRYIGASNLCSIGLSHVLHSNVVPC 138
            R S   W+ + R  G SN+CS  +S +  +N+  C
Sbjct: 2562 RFSLMEWRSQCRACGNSNVCSDCVSMLKDTNIKTC 2596


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 80  QVIYAALDCHMYCIAMLCLVMLSNEFPGSLRVMKLKAAVLEAEEKFDEALELLDNIIKVD 259
           Q+  A    H    +M         FP S  V      +L  ++KFD+A++  D+ I+++
Sbjct: 454 QLGVAQYKTHAIAESMKTFEDCKKRFPNSSEVYNYFGEILLDQQKFDDAVKNFDHAIELE 513

Query: 260 E 262
           +
Sbjct: 514 K 514


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 641 IIRGTVASPRKCGKLCHWAQSKATKQLSRQVTVPD 745
           I R  V +P  CG+ C W +    KQ S +V  PD
Sbjct: 506 IHRLVVNAPDLCGEWCDWYR-HCLKQFSVEVKTPD 539


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 634 WFSRFVVVKYRPSSDLILSGLSFT 563
           W S F ++KYR  SD+  S  SF+
Sbjct: 93  WRSLFELIKYRKDSDMCSSRPSFS 116


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 155 FPGSLRVMKLKAAVLEAEEK-FDEALELLDNIIKVD 259
           FP S R +K + A+L  + + FDEA  L +NI+  D
Sbjct: 266 FPNS-RYLKTQRALLTYDSRDFDEAESLFENILTND 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,582
Number of Sequences: 5004
Number of extensions: 58648
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)