Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4568
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018...    33   0.23 
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701     28   6.6  
11_01_0479 - 3695245-3696588,3696705-3696965                           28   8.7  
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433...    28   8.7  

>04_04_1534 +
           34200538-34200589,34200677-34200857,34201701-34201842,
           34201963-34202032,34202169-34202302
          Length = 192

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 537 IIIKVILHMYSCMYIGMYFR*ATLCY*IIPLY 632
           + IKVIL ++   YIGM F   TL Y + PLY
Sbjct: 122 VFIKVILILWVVSYIGMLFNFLTLIYIVPPLY 153


>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
          Length = 369

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 327 P*PPLEVPKCTVNGSGGPLMTCL---GRRR 247
           P PPL++P+C  + S GP  T     GRRR
Sbjct: 38  PVPPLQLPRCRCHRSEGPWRTTAAANGRRR 67


>11_01_0479 - 3695245-3696588,3696705-3696965
          Length = 534

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 380 WVNIL--VEPFGASDGFDKDRDRRLRYLNAPL 291
           WV++   V    ASD FD+ R RRL+Y + P+
Sbjct: 201 WVDLCRGVILLSASDLFDESRPRRLKYTSLPV 232


>02_05_0922 -
           32742863-32742958,32743081-32743136,32743253-32743382,
           32743768-32743849,32744038-32744227,32744290-32744369,
           32744769-32744985,32745740-32745923
          Length = 344

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 215 ILDPVDRMVNSRRRPKHVIKGPP 283
           I+D +DR+ N  R P  ++ GPP
Sbjct: 58  IVDTIDRLTNENRLPHLLLYGPP 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,729
Number of Sequences: 37544
Number of extensions: 404439
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)