Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4568
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 425 SRFRSGGREQSVY*KCKCLKITWILT 502
           +RF  G R+   Y  C   KI W +T
Sbjct: 473 NRFYDGIRDMIGYYPCCWWKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 425 SRFRSGGREQSVY*KCKCLKITWILT 502
           +RF  G R+   Y  C   KI W +T
Sbjct: 526 NRFYDGIRDMIGYYPCCWWKICWTIT 551


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 182 SSNHLSKKKGVILDPVDRMVNSRRRPKHVIKG 277
           S NH   K G+   PV   V   R+P + I G
Sbjct: 888 SFNHFVLKMGINHGPVTAGVIGARKPHYDIWG 919


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 463 INRLFSTTGSETRLTEKIRRETQWAVCYGLIY 368
           I+R+F+ +    +    I   +Q  +C GL++
Sbjct: 746 ISRIFNASKHSAKRPSFISPRSQLIICSGLVF 777


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,386
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)