Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4565
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 99 3e-22
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa... 32 0.076
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 32 0.076
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.31
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 30 0.41
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 29 0.54
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 29 0.54
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 29 0.71
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 29 0.94
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 29 0.94
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 1.2
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 28 1.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.9
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 27 2.9
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 3.8
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 3.8
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 26 5.0
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 26 5.0
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 5.0
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 26 5.0
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 26 6.6
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 6.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 6.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.6
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 26 6.6
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 6.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.8
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 8.8
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 25 8.8
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 99 bits (238), Expect = 3e-22
Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Frame = +1
Query: 220 KESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGNKL 399
+++ G K + L + + +N +K + KKEK ++E +++ L
Sbjct: 33 RKNVGDKGEKLNEKVLKKAKSVTTNNSLKSEIKKEKSVPSIKE---KNKGDAKHTKLTSL 89
Query: 400 RERMLERLKAAQFRYLNEKLYTSSGTEAHQLFQSDPAAFKTYHEGYQQQLKKWPINPLDL 579
+++M ++L A FR++NE+LYT+ +A Q+F+ +P F YH G++ Q++ WP NP+D+
Sbjct: 90 QQKMKDKLDGANFRWINEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQVEGWPENPVDI 149
Query: 580 IVKRIQ--------KMPKTHKIADMGCGEAALSHCVPH----PVRSFDLVATTPSVEVCN 723
++ ++ K IAD+GCGEA ++ V SFDLVA V C+
Sbjct: 150 FIQHLKIRFEHSNAKKKNNIVIADLGCGEAKIASTFRKSRSLQVHSFDLVAPNEHVVACD 209
Query: 724 IAHTPL 741
IA+ P+
Sbjct: 210 IANVPM 215
>SPAC31G5.18c |||ubiquitin family, human C1ORF55
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 32.3 bits (70), Expect = 0.076
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 169 KKLNEQLQNDDQEDILFKESKGKKAKHLKTSKD--ENINKLEASNYVKIDFKKEKLRKML 342
KK NEQ D D+ G + ++ +K+ E + K A K + KK+KL K+L
Sbjct: 101 KKRNEQENQDSCRDL-----DGNRLGTIRQAKELSEYLAKKPAETRAKKEAKKQKLNKVL 155
Query: 343 QENSLRSRFTVNVRNGNKLRERMLERLKAAQFRYLNEKLYTSSGTEA 483
+S SRF + ++ E + + + + + N LY T A
Sbjct: 156 AADSSSSRF-----DDHEYLEDLEQSVSNVRDAFQNSLLYRRGSTSA 197
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 32.3 bits (70), Expect = 0.076
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +1
Query: 133 DKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKID 312
D+ E+ + K+L + DD E +K KGKK K + + + V++
Sbjct: 120 DEPQEIESPQGPKELTAVTELDDDE-FDYKPKKGKKGKKAQNNNESEAAAPPEIPEVRVK 178
Query: 313 FKKEKLRKMLQENSLRSR 366
KKEK R+ + LR +
Sbjct: 179 TKKEKEREKKEREKLRKK 196
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 30.3 bits (65), Expect = 0.31
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +1
Query: 79 SINNSQPDDYVEVSDLNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKT 258
S ++ D + ++ + + V+ I+ EK+KK + +L+ D E KE K KK K K
Sbjct: 425 SAYSTATDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSK-KEKKEKKDKKHKK 483
Query: 259 SKDENINKLEASNYVKIDFKKEKLRK 336
SK K E S + KK+K +K
Sbjct: 484 SK----RKSEESEDGESPKKKKKSKK 505
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 151 IINEKRKKLNEQLQN--DDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFKKE 324
I ++ KL E+ N Q D+L K + +K KHLK + N LE K+D KE
Sbjct: 1050 ISTKEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEV-QLAKLDIVKE 1108
Query: 325 KLRKMLQENSLRS 363
++ +S+ S
Sbjct: 1109 TNERLSTADSILS 1121
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 592 IQKMPKTHKIADMGCGEAALSHCVPHPVRSFDLVATTPSVEVCNIAHTPL 741
++ + KT +I D+GCG ++ P V +++ PS E+ + A L
Sbjct: 35 LKYVKKTDRILDVGCGPGTITVGFPKYVPEGEVIGVEPSQELLDKAEEAL 84
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 29.5 bits (63), Expect = 0.54
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 157 NEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFK-KEKLR 333
NEK + L DD D + K + K K+ + + E++ +E S + +D + EKL
Sbjct: 124 NEKLEGLESSKNIDDDIDEIEKAAAELKLKYREQDQVEHVAGVEESATIPLDKELDEKLN 183
Query: 334 KMLQEN 351
K+L N
Sbjct: 184 KLLGVN 189
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 94 QPDDYVEVSDLNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAK-HLKTSKDE 270
+ D+ ++S D V+ V +E+ ++ +E N E+ + KKA+ K +KDE
Sbjct: 132 ESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKKAQVKKKRTKDE 191
Query: 271 NINKLEASNYVKIDFKKEKL 330
+ + EA++ K + KK+K+
Sbjct: 192 S-EQEEAASPKKNNTKKQKV 210
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 28.7 bits (61), Expect = 0.94
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 139 VDEVIINEKRKKLNEQLQND-DQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDF 315
+DE I EK K+ NE +ND +Q + +K + K LKT ++ L N +
Sbjct: 101 LDENISFEKSKRDNEGTENDANQYTLELLHAKESELKLLKT----QLSNLNHCNPETFEL 156
Query: 316 KKEKLRKMLQENSL 357
K E +K ++ +L
Sbjct: 157 KNENTKKYMEAANL 170
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 28.7 bits (61), Expect = 0.94
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +1
Query: 160 EKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKM 339
+K++K Q +N DQE +ES K + + D+N++ + Y ++ + KL K
Sbjct: 71 KKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEY--LETENTKLVKT 128
Query: 340 LQENSLRSRF-------TVNVRNGNKL 399
L NSL S F +NV+ G +L
Sbjct: 129 L--NSLNSEFLQLLRKIAINVKEGRQL 153
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 28.3 bits (60), Expect = 1.2
Identities = 30/131 (22%), Positives = 57/131 (43%)
Frame = +1
Query: 220 KESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGNKL 399
K G +K+ + L Y +I+ + +LR ++ ++ +N RN KL
Sbjct: 148 KNEYGSNKGFSHINKENADDSLIQQLYERIELQAAELRS--KDEQVKE---LNARNA-KL 201
Query: 400 RERMLERLKAAQFRYLNEKLYTSSGTEAHQLFQSDPAAFKTYHEGYQQQLKKWPINPLDL 579
E + +A + Y K + EA + + A +T HE Y+QQ + I ++
Sbjct: 202 LEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAAQLQTIHEEYEQQ--QAHIVRMEE 259
Query: 580 IVKRIQKMPKT 612
++ ++K KT
Sbjct: 260 LIHAVEKERKT 270
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 275 IFSSLLVLRCFAFFPLLSLN 216
IFSSLL+L C+AF L+ ++
Sbjct: 717 IFSSLLILACYAFVSLICMD 736
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 118 SDLNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASN 297
S+L +++++NE+ + LN+QL E SK A +L K+ + ++L++ N
Sbjct: 680 SELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLN 739
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +1
Query: 100 DDYVEVSDLNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENIN 279
D+ ++S+ DK E +KR + E+ N +ED K S + + ++ +++
Sbjct: 606 DEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLR 665
Query: 280 KLEASNYVKIDFKKEKLRK 336
K N I K+ +L K
Sbjct: 666 KENEENKQVIALKESELVK 684
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 130 GDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKK----AKHLKTSKDENINKLEASN 297
GD++ + + K++ LN QLQ+ ++I K ++ K + LK K E +L++
Sbjct: 411 GDRLQKALYVLKKELLNAQLQHKINKEIEQKITQRHKEYLLTEQLKQIKRELGQELDSKE 470
Query: 298 YVKIDFKK 321
+ +FKK
Sbjct: 471 ALVTEFKK 478
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 127 NGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTS-KDENINKLEASN-Y 300
+ D E ++ E L + L+ + +E+I+FK KKA L TS K + ++ SN Y
Sbjct: 17 SSDISSEYLLLELDDDLLKTLEENPEEEIVFKSDFDKKASVLCTSDKTYAVRQVVQSNSY 76
Query: 301 VKID 312
+ D
Sbjct: 77 LLFD 80
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 543 TTQEVAHQSIRPNCKEDS 596
T E H SIRPNCK+++
Sbjct: 202 TENEPKHLSIRPNCKDNN 219
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +1
Query: 133 DKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYV 303
+ ++ IN K+ + L N D ED++++ K +KT++++ ++ L+ N+V
Sbjct: 4 ENTKDISINTGYKRQEDAL-NTDSEDLIYRPK-----KIIKTNQEDAVHDLKYENFV 54
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +1
Query: 154 INEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLR 333
INE+ KKL E+ QN D + +KHL +E + ++ A ++ + ++L+
Sbjct: 146 INERLKKLTEEQQNVD----MLVAKVNFLSKHLH-DNEEKLMQVNA-KMDEVLAENKRLQ 199
Query: 334 KMLQENSLRSR 366
++L N L S+
Sbjct: 200 QLLDHNDLLSK 210
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 5.0
Identities = 28/125 (22%), Positives = 60/125 (48%)
Frame = +1
Query: 85 NNSQPDDYVEVSDLNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSK 264
++ QP + SD+ +K ++I + ++K E Q D ++ F + KG + T +
Sbjct: 282 SDQQPARNIVTSDIQNEKSLLLLIRDLKEKQTESFQ--DWNEVDFLQLKGLEISPPPT-R 338
Query: 265 DENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGNKLRERMLERLKAAQFRY 444
+ I +LE + + +K L+ + Q NS+ S + + + + L L+ Q +
Sbjct: 339 PKFIPELEFPD----NARKRALKYLNQSNSVSSSEPIITKFNIPITLKDLHTLRNRQ--W 392
Query: 445 LNEKL 459
LN+++
Sbjct: 393 LNDEV 397
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +1
Query: 118 SDLNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASN 297
S+L +DE+ + K NE+L +Q + K ++ +H + + IN L +
Sbjct: 60 SELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQL 119
Query: 298 YVKIDFKKEKLRKMLQENSLR 360
++ EK + +N LR
Sbjct: 120 QIQ-KSNPEKHEDAVSQNRLR 139
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 208 DILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKML--QENSLRSRFTVN 378
DI+ + ++K LK +K N+ ++ + +K EKL L QE+ S +N
Sbjct: 39 DIISNKETFSESKQLKKAKSRNVTLVDKNTKADKRYKSEKLSDYLLNQEHHKNSPKIIN 97
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 124 LNGDKVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENI 276
LNG + E +NE+RK L Q + K S K + ++ +E++
Sbjct: 513 LNGQPLLETPLNERRKLLYSMFQPSTGDFTFAKHSDQKSIESIEEFLEESV 563
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 250 LKTSKDENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGN 393
LK K+E ++ S ++ + EKL+ LQE + + V NGN
Sbjct: 44 LKYEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSRVSNGN 91
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 397 LRERMLERLKAAQFRYLNEKLYTSSGTEAHQLFQSDPAAFKT 522
L+ ++L +RYL + ++ G + + F++ AAFKT
Sbjct: 282 LKNKLLLTDNCNDYRYLKDSVHIIDGVDDKEEFKTLLAAFKT 323
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +1
Query: 223 ESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGNKLR 402
E + + +S I L N +ID +K LR + +NS ++ N+R +
Sbjct: 448 EDDNNSLRLMTSSLGNQIESLRTQNR-EIDEEKNHLRLLASKNSDKALAETNIRLQEVTK 506
Query: 403 ERMLERLKAAQFRYLNE 453
E LE L+ LNE
Sbjct: 507 E--LETLRMKNSNDLNE 521
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 85 NNSQPDDYVEVSDLNGD--KVDEVIINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKT 258
+N Q D + + GD ++ + K +L N+ E I F +++GK + + +
Sbjct: 132 DNFQNSD-INIESFKGDIEASGSILTTHENKSFTLKLANE-LEFIFFHDTRGKFSVYCSS 189
Query: 259 SKDENI 276
SKD+ I
Sbjct: 190 SKDDAI 195
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/119 (18%), Positives = 53/119 (44%)
Frame = +1
Query: 151 IINEKRKKLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKL 330
++ ++ + E ++ D+E + ++ K K +H K KD+ +++ +I K +K
Sbjct: 47 LLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDK-----PSADKDRISKKDKKK 101
Query: 331 RKMLQENSLRSRFTVNVRNGNKLRERMLERLKAAQFRYLNEKLYTSSGTEAHQLFQSDP 507
K + + +N G K+ + + A+ + +E+ Y + H + +DP
Sbjct: 102 SKKGKSKTKEESIEINAEEGAKIAQPAIGSANAS--NHNDEEAY-DRYIKKHNISFADP 157
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 362 LLNEFSCNIFLSFSFLKSILT*FDASNLFI--FSSLLVLRCFAFF 234
LL F FLSFSF S L F S +FI FSS +L FF
Sbjct: 117 LLFFFFLLFFLSFSFSFSFL--FFLSQIFIVYFSSFPILHFLFFF 159
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 172 KLNEQLQNDDQEDILFKESKGKKAKHLKTSKDENI---NKLEASNYVKIDFKKE-KLRKM 339
++++QL N +QE+ F+E + HL + + +LE + + D ++ +L+++
Sbjct: 934 EISKQLDNSEQENNKFRERIAELESHLSNYAEAKLAQERELEQTRVLISDQSQDGELKEL 993
Query: 340 LQE 348
L+E
Sbjct: 994 LEE 996
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +1
Query: 223 ESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGNKLR 402
++KGK K+ + K+EN N+ Y + ++ KML + + V+ +R
Sbjct: 3 KNKGKGGKNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIR 62
Query: 403 ERMLERL 423
++ +++
Sbjct: 63 GKLRKKV 69
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 85 NNSQPDDYVEVSDLNGDKVDEVIINEKRKKLNEQLQNDDQEDIL-FKESKGKKAKHLKTS 261
NNS D+++ D N D+ ++ + N+K K NE L+ + +I F +G+
Sbjct: 152 NNS---DFIKF-DWNSDEDEDSVSNDKSKN-NESLKKSSKNEIPGFMRQRGRFFHEANEK 206
Query: 262 KDEN 273
D N
Sbjct: 207 SDSN 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,501
Number of Sequences: 5004
Number of extensions: 49403
Number of successful extensions: 174
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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