Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4564
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 277 9e-76
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 151 1e-37
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 137 1e-33
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 133 2e-32
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 124 1e-29
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 107 2e-24
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 100 3e-22
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 78 1e-15
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 52 7e-08
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.54
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 6.7
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 6.7
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.9
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 8.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.9
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 8.9
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 277 bits (680), Expect = 9e-76
Identities = 148/240 (61%), Positives = 176/240 (73%)
Frame = +3
Query: 39 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 218
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 219 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 398
VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 399 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFT 578
PQ II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS +K HF
Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILSQNKNHFA 176
Query: 579 KLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIA 758
+LAVDAVLRLKGS NL IQIIKI GG L++SFLDEGF+LNK +GV+ PK +ENANILIA
Sbjct: 177 QLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIA 236
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 151 bits (365), Expect = 1e-37
Identities = 88/226 (38%), Positives = 137/226 (60%), Gaps = 8/226 (3%)
Frame = +3
Query: 102 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 281
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 282 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 461
LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+A A + + +
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139
Query: 462 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN------ 623
+L + S L N+A+T++SSKI+ N + F+ +AVDA+L +K S +
Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRY 195
Query: 624 -LKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPK-KVENANILI 755
+KA+ I+K G ES L +G+ LN + K +V+NA I +
Sbjct: 196 PVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAKIAV 241
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 137 bits (332), Expect = 1e-33
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 5/239 (2%)
Frame = +3
Query: 51 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 230
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 231 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 410
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 411 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAV 590
I G+R A+ A + E + H +E LR L A T ++SK++ ++ FTK+ V
Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
Query: 591 DAVLRLKGSG-NLKAIQIIKISGGLLEESFLDEGFLLNKKVGV----HQPKKVENANIL 752
DAVL L N I I K+ GG +E+S L +G K QPK +N IL
Sbjct: 185 DAVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKIL 243
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 133 bits (322), Expect = 2e-32
Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 7/225 (3%)
Frame = +3
Query: 102 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 281
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 282 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 461
LVD+S QD E GDGTTSV + KL+++ +HP I ++ A+ + E
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137
Query: 462 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNL 626
+ + + E+ LR A T+L+SKI+S + +AVDAVL R+ + +L
Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDL 192
Query: 627 KAIQIIKISGGLLEESFLDEGFLLNKKV--GVHQPKKVENANILI 755
K I+I+K GG+++++ L G L + P ++E ANI +
Sbjct: 193 KDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIAL 237
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 124 bits (299), Expect = 1e-29
Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%)
Frame = +3
Query: 108 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 287
S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 288 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 467
+SK QD+E+GDGTT V V LI++ +HP I G+ A A + L +A
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153
Query: 468 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA-IQII 644
D E + +L A+T+L SK++S +HF +AVDAVL + ++I
Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELI 211
Query: 645 KIS---GGLLEESFLDEGFLLNKKVGVHQ-PKKVENANILI 755
K+ GG ++++ L +G +++K + Q P ++ENA I I
Sbjct: 212 KVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAI 252
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 107 bits (256), Expect = 2e-24
Identities = 68/244 (27%), Positives = 130/244 (53%), Gaps = 8/244 (3%)
Frame = +3
Query: 48 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 227
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 228 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 407
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 408 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 587
+I ++ A + A + E + N+++ ++ + RT + +K+++ + LA
Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 588 VDAVLRLKGSGN-------LKAIQIIKISGGLLEESFLDEGFLLNKKV-GVHQPKKVENA 743
+ AV + + N + ++ K+ GG +E S + +G +LNK V +++EN
Sbjct: 175 LRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENP 234
Query: 744 NILI 755
I++
Sbjct: 235 RIVL 238
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 100 bits (239), Expect = 3e-22
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 4/215 (1%)
Frame = +3
Query: 123 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 302
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 303 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 482
QD+ GDGTTSV + I + LHP I G+ +A + A L D +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141
Query: 483 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG---NLKAIQIIKIS 653
+ R L N+A+T+LS+KI S E VDA+L ++ +L ++I+K+
Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQ 195
Query: 654 GGLLEESFLDEGFLLNKKV-GVHQPKKVENANILI 755
++ L G LL+ PK+V+NA ILI
Sbjct: 196 NRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILI 230
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 78.2 bits (184), Expect = 1e-15
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Frame = +3
Query: 132 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 311
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 312 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 491
E+GD V V +I L P I G+ +A + L E D +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151
Query: 492 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGG 659
+L RT +SSK N ++ + L A+L + N+ I+++KI G
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMGS 210
Query: 660 LLEESFLDEGFLLNKK 707
L S + +G + ++
Sbjct: 211 SLYNSQVVKGMVFPRE 226
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 52.4 bits (120), Expect = 7e-08
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 6/224 (2%)
Frame = +3
Query: 102 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 269
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 270 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQ 449
A+++ D++ +E GDGTT+ TV + + +P + G ++A D +
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVE 160
Query: 450 ALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLK 629
L Q N + + ++ +A T+S +N H +L A+ R+ G +
Sbjct: 161 FL-------QANKRDITTSEEISQVA--TIS----ANGDTHIGELLAKAMERVGKEGVIT 207
Query: 630 AIQIIKISGGL--LEESFLDEGFLLNKKVGVHQPKKVENANILI 755
+ IS L E D G++ + + +KVE N LI
Sbjct: 208 VKEGRTISDELEVTEGMKFDRGYISPYFITDVKSQKVEFENPLI 251
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 501 LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 647
L V E++ LS LS +K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 530 DYTELKDPFKSQRAFHKISS*CSFAFERI 616
D +L +P+++ FH S C F F+ +
Sbjct: 107 DVAQLVEPYRNDCIFHDASGACHFFFKEV 135
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +3
Query: 126 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 305
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 306 DEEVGD 323
++ D
Sbjct: 380 PDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 132 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 254
+G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 747 C*HFLLSLVDVHQLFCLARTL 685
C HF LS V VH FC + L
Sbjct: 106 CHHFKLSKVKVHLFFCRLKLL 126
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 534 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 647
T +KILS+H E TK V + GS +L A + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 256 PIDFNIVAPSFVTST*PEFLPQETKILSIP 167
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,820
Number of Sequences: 5004
Number of extensions: 54592
Number of successful extensions: 145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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