Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4563
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   7.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.5  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   9.9  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.9  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 653  VKEKKPIASISRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 510
            VKEK+ +A++ +  N   R    F  EN + K+  F    L G+ ++H
Sbjct: 1843 VKEKETVAALKQQENDGYRSAPNFFLEN-SKKLIRFTFDVLRGVSNKH 1889


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 94   SPYAY*TSGSSQLLPFCSTRGF 29
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 354 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 503
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 426 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 551
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 354 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 476
           C    A  +  +S G +VHA  RAA    +  A  CL   K
Sbjct: 54  CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 654 C*RKKTDSIDLPRSK 610
           C + KTD IDLPR K
Sbjct: 311 CIKAKTDCIDLPRKK 325


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 405 PNVRNCGSSRTEQYYYRNDKPSVG 334
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 158  NFSGTSC*KLFILKDR*AVLSQSL 87
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,152
Number of Sequences: 5004
Number of extensions: 53958
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)