Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4562
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   5.2  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   9.1  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 142  YITFKIIVIMYYRINLHNFAWKHFTIDXXXXXXXLF--NSEHFASVFVG 2
            +IT   + I  +  N H FAW  F +D       LF  NS + A+ ++G
Sbjct: 1354 WITLTALCISPFLYNPHQFAWTDFFVDYREFMRWLFRENSRNQANSWIG 1402


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 187 KNLLINVTLSSIHTQYITFKIIVIMYYRINLHN 89
           KN+L++  L+    ++I F+I +  YYR N+ +
Sbjct: 537 KNVLVSFFLTLKGKKFIYFRICITNYYRCNVRD 569


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 358 TLSNVDIEITYDA*NSN*GYVESHDSRK*CFCETGFKNLTFKY 230
           +L + D+EIT+   NS+  YV   D  +     T +KN T KY
Sbjct: 196 SLDSCDVEITFKEVNSDFTYV---DGSELTVRRTAYKNNTSKY 235


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 626 FFFYCPRWGDELTAPVKWLLEPIDIYNVNAPHPLRY 519
           F +Y PRW    TAP +     I    +  P  +RY
Sbjct: 363 FIWYGPRWAQAATAPSRLSKGFITEGGIRCPAIIRY 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,252
Number of Sequences: 5004
Number of extensions: 40939
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)