Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4561
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   9.1  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.1  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 407 TRCNYTEPLELISQNVWHIYVVDVYGLQ 324
           T CNY+ P EL+ +N+   YVV+   L+
Sbjct: 620 TNCNYSTPAELLRENI--DYVVNSVALK 645


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 379 SKGSV*LQRVPYPSNRNSSLLHD 447
           SK S+ L  +P+P N++    HD
Sbjct: 250 SKSSLPLHHIPWPPNQHIKFAHD 272


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 245 ISTIDLCFFYCLDVWT 292
           IS +  CFF C+D+WT
Sbjct: 102 ISVLFQCFF-CIDIWT 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,133
Number of Sequences: 5004
Number of extensions: 40682
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)