Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4561
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0117 + 20302795-20304816                                         29   1.7  
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153...    27   7.0  
12_02_0301 + 17063206-17063964                                         27   9.2  
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695...    27   9.2  

>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 214 HIQIKTSSLIHIDYRPLFFLLLRCVDELTAHLMS 315
           H+Q   + ++++DY PL F  +  V  +T+ L+S
Sbjct: 86  HLQSNLTGVVYVDYSPLEFNAVALVGRITSSLLS 119


>08_01_0181 +
           1530623-1531626,1531723-1531902,1531998-1532177,
           1532363-1532442,1532528-1532701,1533001-1533118,
           1533223-1533301
          Length = 604

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 409 PYPSNRNSSLLHDRNRRGGDTYPCGSQEALP 501
           PYP      +L D N  GG  YP G ++A P
Sbjct: 163 PYPLRGGQHVLDDNNFGGGYYYPAG-EDAFP 192


>12_02_0301 + 17063206-17063964
          Length = 252

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 430 SSLLHDRNRRGGDTYPCGSQEALPPLKKL 516
           S LLH R R GG T+P     AL  L+ L
Sbjct: 55  SRLLHRRPRGGGVTFPAAVAAALDDLEDL 83


>06_02_0333 +
           14567509-14568081,14568109-14568438,14568642-14569550,
           14569598-14569777,14570416-14570698,14571339-14571832
          Length = 922

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 363 CVAHLRRRCLWAPVT 319
           C  H+RRRC WA  T
Sbjct: 264 CRKHMRRRCTWATTT 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,943
Number of Sequences: 37544
Number of extensions: 265007
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)