Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4560
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    28   1.4  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.7  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   7.5  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.9  

>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 420 LCIYFVKYSSNFSLTKKALR--CFTQNMRNNNE 512
           LC YF+       +T K  +  CF +N+RNN++
Sbjct: 11  LCAYFISVVFGHGITLKPHQRECFYENLRNNDQ 43


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 366 CESYYYYFKTKKTLCNL*FAY*CLRSNKS 280
           C+S++Y  K   T   L F Y CL S+ S
Sbjct: 502 CKSFFYISKESGTDSALKFLYKCLNSDSS 530


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 169 VRTVQMYSFVTFRTP*KKWQ 228
           V T+Q ++++ FRT   KWQ
Sbjct: 43  VGTIQRFAYLNFRTDEDKWQ 62


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 189 IHLNSAYYRYARPTLAARSFIKLQFEGW 106
           +H+++ YY Y    LAA  F+ L    W
Sbjct: 22  LHMDTLYYYYFVSHLAAALFVDLPITEW 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,801
Number of Sequences: 5004
Number of extensions: 47560
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)