Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4560
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 489 QNMRNNNEAI*LVPIFRINVIDSFEFCFN 575
           Q  RN+ + I   P F +NV+ SF   FN
Sbjct: 132 QKWRNHRKLI--APTFHLNVLKSFIDLFN 158


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 SNNTIHS*THKIEYS 392
           SNNTIH+  +K  Y+
Sbjct: 85  SNNTIHNNNYKYNYN 99


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 SNNTIHS*THKIEYS 392
           SNNTIH+  +K  Y+
Sbjct: 85  SNNTIHNNNYKYNYN 99


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 SNNTIHS*THKIEYS 392
           SNNTIH+  +K  Y+
Sbjct: 86  SNNTIHNNNYKYNYN 100


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 SNNTIHS*THKIEYS 392
           SNNTIH+  +K  Y+
Sbjct: 86  SNNTIHNNNYKYNYN 100


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 SNNTIHS*THKIEYS 392
           SNNTIH+  +K  Y+
Sbjct: 86  SNNTIHNNNYKYNYN 100


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 SNNTIHS*THKIEYS 392
           SNNTIH+  +K  Y+
Sbjct: 86  SNNTIHNNNYKYNYN 100


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 615 NPLIVVGLYYKMKSSWP 665
           NP+  +  +Y + SSWP
Sbjct: 425 NPISPLNDWYSLASSWP 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,396
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)