Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4559
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.7  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.7  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 156 FCIDDHF-VGAT*LLNK*ITYPFLNIITRHIFFEE 55
           F IDD F VG + LL K +T+P ++ IT ++  +E
Sbjct: 722 FAIDDQFYVGDSGLLVKPVTHPSIDKITIYLADDE 756


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 463 ANSILNKYIDLFSKKCNLNTQQPQ 534
           AN +L +Y+D+ ++ C L +  P+
Sbjct: 753 ANRMLREYVDVLNEVCRLRSDTPE 776


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 221 CTVDCTYN*GDISHELLSVCHCFVLMIILLV 129
           C VD  Y     SH LL V + F+ +IILLV
Sbjct: 45  CVVDVKYYFEGFSHSLLFV-YFFLTLIILLV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,444
Number of Sequences: 5004
Number of extensions: 49989
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)