Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4559
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   4.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   4.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.1  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 518 IHNNHNFRKVLHNDC 562
           IHNN+N++   +N+C
Sbjct: 90  IHNNNNYKYNYNNNC 104


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 693 DPARNSVGCV*GVYAVRSYWSIVQERCYFIKSLNYPQDEIGNATQ 559
           D  +NS   +   +  + Y++++  +CY    L +P    G  T+
Sbjct: 97  DCLKNSADTISSYFVGKMYFNLIDTKCY---KLEHPVTGCGERTE 138


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 693 DPARNSVGCV*GVYAVRSYWSIVQERCYFIKSLNYPQDEIGNATQ 559
           D  +NS   +   +  + Y++++  +CY    L +P    G  T+
Sbjct: 102 DCLKNSADTISSYFVGKMYFNLIDTKCY---KLEHPVTGCGERTE 143


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 693 DPARNSVGCV*GVYAVRSYWSIVQERCYFIKSLNYPQDEIGNATQ 559
           D  +NS   +   +  + Y++++  +CY    L +P    G  T+
Sbjct: 102 DCLKNSADTISSYFVGKMYFNLIDTKCY---KLEHPVTGCGERTE 143


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 659  PQTQPTEFLAGSSQWDAFPKEKKE 730
            P  +PTE+L   S    + K +KE
Sbjct: 973  PDQKPTEYLLEDSMKQQYGKRRKE 996


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 152 VLMIILLVQLNY*INKLPTH 93
           + M++  + +NY  N+LPTH
Sbjct: 37  ITMVLENLLMNYENNQLPTH 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,513
Number of Sequences: 438
Number of extensions: 3856
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)