Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4558
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    29   0.65 
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   4.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   6.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   6.1  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   8.0  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 145 TRGLSYTDYILPINSEYVRKVVE 213
           ++GL+   Y LP+N+++VRKV++
Sbjct: 524 SKGLADKVYFLPVNADFVRKVIK 546


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 90  VLKELDGLRESGYGREG 40
           VL    G++ESG+GREG
Sbjct: 463 VLSPFGGVKESGFGREG 479


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 601 CILCYL*EWKSFKNTILNQ 657
           C+LCY   +K F+N  +NQ
Sbjct: 684 CVLCYKIYFKFFRNRFMNQ 702


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 590 ELHQENLFQMPIFYSIVFLPTLLAKCTPLRTTVAVY 483
           EL    +   P+ Y   F+P++   CTPL     V+
Sbjct: 243 ELFFPTILLYPLVYQSDFVPSVSENCTPLELLKTVF 278


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 548 NRKLAFETGFPGVIQAIVVFCVIYKNGNRLK 640
           N  L     FP  + A++ F + +KN  RL+
Sbjct: 331 NSPLQLRASFPAFVNAVIHFLLEFKNVRRLE 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,157
Number of Sequences: 5004
Number of extensions: 51299
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)