Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4558
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.1  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 631 ISILINNTEYNNCLNYTRKTCFKCQFSIPLYFCLHFLQNV 512
           IS L NN +Y+N  NY         +    Y+ +++++ +
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 631 ISILINNTEYNNCLNYTRKTCFKCQFSIPLYFCLHFLQNV 512
           IS L NN +Y+N  NY         +    Y+ +++++ +
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 631 ISILINNTEYNNCLNYTRKTCFKCQFSIPLYFCLHFLQNV 512
           IS L NN +Y+N  NY         +    Y+ +++++ +
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 631 ISILINNTEYNNCLNYTRKTCFKCQFSIPLYFCLHFLQNV 512
           IS L NN +Y+N  NY         +    Y+ +++++ +
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,328
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)