Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4555
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    27   2.8  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   3.8  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   5.0  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   8.7  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   8.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.7  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -3

Query: 231 LTKVLINASSYFKTTFHYFSSIWVNTSLFL*SYRYT*TLHSCSSLVLKCHLRHYE 67
           L K+  N   Y K     FS++ ++T+     YR++   +SC+ L L   L + +
Sbjct: 38  LMKITSNGRPYSKDFLELFSTMVISTNFSRNRYRFSYVENSCTLLQLLSTLENLQ 92


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 425 KELHLHNIRHLTYKQICV 478
           KELH  N R+ TY+Q C+
Sbjct: 410 KELHRVNSRYYTYQQACI 427


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 24  FENFVNLEGKHINIIHNGEDGISTPGWNSYGVSKYTDNFTKRG 152
           F  +   +  HI +IH  +  +++  W  Y    +  N TK G
Sbjct: 652 FSRYTLQDSFHITMIHESQKPVNSRIWEQYLQHMHDKNTTKMG 694


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 437 LHNIRHLTYKQICVKNFKSLFMSLLFYK 520
           LHNIR+L  K IC   F     +  F++
Sbjct: 348 LHNIRYLQEKHICFVTFVDPVSAFRFFE 375


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 36  VNLEGKHINIIHNGEDGISTPGWNSYGV 119
           + L GK  NI+ N  D  S   W +YG+
Sbjct: 269 LELGGKSPNIVFNDADLDSAAVWTNYGI 296


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 294 CWTSFMNFSYINTVICISLGALTKVLINASSYFKTTFHYFSSIWVN 157
           C  S + FS    +    +  L++ L+  S Y   T+H    IW++
Sbjct: 573 CHNSLIYFSSGLKMSKSVISCLSRKLVKGSEYLLRTYHEVIRIWIS 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,115
Number of Sequences: 5004
Number of extensions: 58184
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)