Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4553
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   7.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.2  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    25   9.5  

>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 128 YSKNIHIIIFKMNNFILSIEVRKKKVVFKASTY 226
           Y  NI++  FK+  F  S       VVF+  TY
Sbjct: 62  YENNIYMRTFKLRPFAKSGVTNSSNVVFQMKTY 94


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 143  ECSLNTHFKKKKILYADFRQSNHGIVLKT 57
            +C LN++F +K ++  DF  +N+  V  T
Sbjct: 2049 DCQLNSNFFEKILVDMDFNDNNYRTVANT 2077


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 132 EYSLQEEENIICGFPPIESRNRAQNIIISGQQ 37
           E SL ++  ++C  PP++S   A+   +   Q
Sbjct: 122 ESSLLDDSQLLCSSPPVDSTEEARTCNVEEDQ 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,489
Number of Sequences: 5004
Number of extensions: 42669
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)