Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4552
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    32   0.080
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    26   5.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   9.2  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   9.2  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +2

Query: 461 ILLFVIQISFLFMVSRFDFVVFCLH*LIDICFTAVVPNCTRRIVNVFLFFINSFHLS 631
           IL+FV   S +F +  FD+++ C+  +I      +V   T+ +++ FL  + S  LS
Sbjct: 160 ILIFVFFFSVIFRIEMFDWILLCITLVISAGVVLMVATETQFVLSGFLLVMASSVLS 216


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 551 KYQSISANKKLQNQNEIP*RES*FVLRII 465
           K Q++ A KKLQ +NEIP   +   +RI+
Sbjct: 151 KSQALEAIKKLQEKNEIPIVRARMRIRIV 179


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 761 N*MFQLIEMVLPIFFFYQTVSSINFILYINYLTLL 657
           N  F L  M L +FFF +++  +++     ++TLL
Sbjct: 226 NFFFTLGFMALGVFFFRRSLKKVSYFNLATFITLL 260


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 556 YSRSSKLHSSYCKCVFVFHKFISS*SCRFSFQLDNRVK*FIYKIKLIEETV 708
           Y  S K HS Y  C+ +   FI++ S   + +L N     ++K   +EE++
Sbjct: 366 YLGSLKGHSDYVSCLAIQDSFIATGSMDTTVRLWNLDNDVLHKDNPVEESL 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,459
Number of Sequences: 5004
Number of extensions: 56752
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)