Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4552
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1505 + 30635572-30635802,30636977-30637135,30637217-306373...    28   9.6  

>06_03_1505 +
           30635572-30635802,30636977-30637135,30637217-30637328,
           30638004-30638123,30638264-30638415,30638938-30638972,
           30639077-30639233,30639328-30639381,30639502-30639594,
           30639685-30639827,30639939-30640009,30640323-30640453
          Length = 485

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 566 VPNCTRRIVNVFLFFINSFHLSLVDFHSNWTTELNN 673
           +P C+   + V L   +SF   L  FHS   T+L+N
Sbjct: 36  IPGCSNDFILVGLLSNSSFSFFLSGFHSPTATDLSN 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,727,459
Number of Sequences: 37544
Number of extensions: 268624
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)