Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4551
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    28   1.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   1.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   3.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   4.1  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    26   5.4  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   5.4  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   7.2  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.5  

>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 560 LECSRSPIMERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRRACCSFGRPRA 396
           +E S+SP     S  A   P+ P    + S++W   PR   GR+ A  + GR +A
Sbjct: 1   MESSKSPSEVEKSSSASPAPQKPMI--RVSKQWVVPPRPKPGRKPALDALGRRKA 53


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 450 STH--LRSPPRVLLIWPPTRKPLTLPQLMPLSNTGELI 343
           +TH  + SPP   ++   T +PL+ P ++P SN+  L+
Sbjct: 154 NTHDSVNSPPSYGIMASATNQPLSHPTIVPSSNSSSLL 191


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
 Frame = -2

Query: 605 ECPRPPGLERSRSPGLECS-RSPIMERSSLLAIRCPRSPAR*HQTSQRWFRHPRH----T 441
           E P  P   R+    L C+  +P+  ++ +  +  P SP+    T   +FR P      T
Sbjct: 83  ESPALPTPRRTLFRSLSCTVETPLANKTIVSPL--PESPSNDALTESYFFRQPASKYSIT 140

Query: 440 *GRRRACCSFG---RPRASRSLCPSSCPSATLVN*FASSSLSEL-PKVSRLVTSGEAVNV 273
               R   +     +P+AS +L  +    AT  +  +SS  S L P VSR  +SG A   
Sbjct: 141 QDSPRVSSTIAYSFKPKASIALNTTKS-EATRSSLSSSSFDSYLRPNVSRSRSSGNAPPF 199

Query: 272 LRSR 261
           LRSR
Sbjct: 200 LRSR 203


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
 Frame = -3

Query: 631  WNAPAHQD-WNAPAHQD-WNAPAHQD-WNA----PAHQSWNGAPSWQSGA--PAHQPAN 482
            WN+ +    WN+      WNA +    WN+    PA    N  P+W SGA  PA    N
Sbjct: 848  WNSGSRTPAWNSGNKTPAWNAGSRTPAWNSGNKTPAWNVGNKTPAWNSGAKTPAWNAGN 906


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 649 LLPQQQWNAPAHQDWNAPAHQDW 581
           L+PQ+QW+ P + D +   H++W
Sbjct: 133 LVPQEQWSIPEYIDQD-KMHENW 154


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 441 LRSPPRVLLIWPPTRKPLTLPQLMPL 364
           + SP ++ ++ PP   P +LPQL PL
Sbjct: 83  IASPRQMQVLTPPLSCPESLPQLEPL 108


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 647 PAPTTMERSSSPGLECPRPPGLERSRSP 564
           P+P+T +   SP   C R    E S SP
Sbjct: 159 PSPSTAQNHRSPPASCKRLSSCESSGSP 186


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 271 NTFTASPLVTSRLTLGSSEREEEAN*FTSVAEGHELGQSERLARGRPNEQHARRRPQVCR 450
           NT + S +  + +++ S      AN  +SV    +   S   A+  PN    + +  VC 
Sbjct: 14  NTLSESKVSENLMSINSDSGTSNANTPSSVTSNSKPVASSTAAKKDPNAPPQKVKQYVCE 73

Query: 451 GC 456
            C
Sbjct: 74  TC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,048
Number of Sequences: 5004
Number of extensions: 43846
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)