Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4551
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.       35   0.29 
AK128837-1|BAC87637.1|  286|Homo sapiens protein ( Homo sapiens ...    32   2.0  
AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei...    31   3.6  
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    31   3.6  
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    31   3.6  
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.          31   3.6  
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.     31   3.6  
BC104469-1|AAI04470.1|  289|Homo sapiens chromosome 19 open read...    31   4.7  
BC104468-1|AAI04469.1|  253|Homo sapiens C19orf19 protein protein.     31   4.7  
AK097378-1|BAC05028.1|  289|Homo sapiens protein ( Homo sapiens ...    31   4.7  
X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein.        30   6.2  

>BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.
          Length = 765

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 640 QQQWNAPAHQDWNAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSG 506
           ++ +  P  +D+  P   D+  P  +DW  P  + + G P   SG
Sbjct: 592 EEDFRRPWEEDFRCPPEDDFRHPREEDWRRPPPEHFGGLPQSTSG 636


>AK128837-1|BAC87637.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46366 fis, clone TESTI4051388. ).
          Length = 286

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 459 PASSTHLRSPPRVLLIWPPTRKPLT-LPQLMPLSNTGELIRLFFPFRAPQSE-PAR 298
           P  ++  R+PPR  L  PPTR P T +P   P + T        P R P +E PAR
Sbjct: 58  PPRASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTAS---PARTPPTESPAR 110


>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
           kinase protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 590 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 426
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 590 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 426
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 590 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 426
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 590 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 426
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
          Length = 1028

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 590 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 426
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 459 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 514


>BC104469-1|AAI04470.1|  289|Homo sapiens chromosome 19 open reading
           frame 19 protein.
          Length = 289

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 644 APTTMERSSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPA 489
           AP  +E +  PG  CP    + ++R+P          +R+S +A   P  PA
Sbjct: 230 APRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRH-SKRASTMAATTPSRPA 280


>BC104468-1|AAI04469.1|  253|Homo sapiens C19orf19 protein protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 644 APTTMERSSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPA 489
           AP  +E +  PG  CP    + ++R+P          +R+S +A   P  PA
Sbjct: 194 APRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRH-SKRASTMAATTPSRPA 244


>AK097378-1|BAC05028.1|  289|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40059 fis, clone TCOLN2000139. ).
          Length = 289

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 644 APTTMERSSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPA 489
           AP  +E +  PG  CP    + ++R+P          +R+S +A   P  PA
Sbjct: 230 APRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRH-SKRASTMAATTPSRPA 280


>X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein.
          Length = 1400

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 602 CPRPPGLERSRSPGLECSRSPIMERSS 522
           CP PPGLE + SP   C   P++  SS
Sbjct: 407 CPNPPGLE-ALSPNTSCRHFPLLVSSS 432


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,268,046
Number of Sequences: 237096
Number of extensions: 1892378
Number of successful extensions: 10391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10317
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)