Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4551
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    38   0.006
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    33   0.18 
AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   8.7  

>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 640 QQQWNAPAHQDWNAPAHQDWNAPAHQDWNAPAHQSWNG--APSWQSGAPAH 494
           Q  W+ P H     PAHQDW      DW+A   + W G   PS  SG P +
Sbjct: 47  QLPWHQPRHP--GPPAHQDWG-----DWSANRDEQWRGPPGPSGPSGPPVY 90


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 643 PQQQWNAPAH-QDWNAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAH 494
           PQQ + AP        P    + AP  Q ++AP+ QS+ G P   S AP +
Sbjct: 327 PQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGN 377


>AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical
           protein Y71F9B.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 297 YEPAHFGELGKGRRGELIHQCC 362
           Y+P  F ELG G+R  + H+CC
Sbjct: 330 YDPIAFSELGIGKRTVIRHECC 351


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
 Frame = -2

Query: 647 PAPTTMERSSSPGLECPRPP--GLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQT 474
           PAP    RS S     P  P     RS+SP     RSP   +S   A R  RSP++    
Sbjct: 342 PAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSP-PAPRRRRSPSKSRSP 400

Query: 473 SQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSCPSATLVN*FASSSLSELPKVSR 303
           + +    P     RR    S   P   R+   S  P A       S S S  P+  R
Sbjct: 401 APKREIPPARR--RRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRR 455



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = -2

Query: 593 PPGLERSRSPGLECSRSPIMERSSLLAIRCP---RSPAR*HQTSQRWFRHPRHT*GRRRA 423
           PP   R RSP    S +P   RS   + + P   RSP+     S R  R P     RR++
Sbjct: 434 PPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQS 493

Query: 422 CCSFGRPRASRSLCPSS 372
                 PR  RS   SS
Sbjct: 494 PQRRRSPRRRRSPSSSS 510



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/55 (41%), Positives = 26/55 (47%)
 Frame = -2

Query: 650 APAPTTMERSSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR 486
           +PAP    RS S   + PR     R RSP    SRSP   RS   A R  +SP R
Sbjct: 448 SPAPRR-RRSPSKSPQAPR-----RRRSPSGSKSRSPRRRRSPAAAPRRRQSPQR 496


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -3

Query: 643 PQQQWNAPAHQDWNAPAHQDWNAPAHQDWN--APAHQSWN 530
           PQ QWN    Q  N   HQ   AP  Q  N   P  Q +N
Sbjct: 39  PQHQWNPATQQQNNYYYHQQPAAPPQQHTNPQQPPQQQYN 78


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -3

Query: 643 PQQQWNAPAHQDWNAPAHQDWNAPAHQDWN--APAHQSWN 530
           PQ QWN    Q  N   HQ   AP  Q  N   P  Q +N
Sbjct: 39  PQHQWNPATQQQNNYYYHQQPAAPPQQHTNPQQPPQQQYN 78


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -3

Query: 643 PQQQWNAPAHQDWNAPAHQDWNAPAHQDWN--APAHQSWN 530
           PQ QWN    Q  N   HQ   AP  Q  N   P  Q +N
Sbjct: 39  PQHQWNPATQQQNNYYYHQQPAAPPQQHTNPQQPPQQQYN 78


>Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical
           protein K01H12.4 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 152 YKTTSYSMNFCTYLKYRFVCMRN*RIKLYGMENEKKKKKNS 30
           Y +T+   N   Y    FV     R+KL+    EK+KKKNS
Sbjct: 218 YASTTAKSNSLAYQPMEFVSSDG-RVKLWLQPLEKQKKKNS 257


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 623 SSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCP 501
           S  PG +  R PG++  R PG + SR P  +   +   R P
Sbjct: 485 SRVPGFQGARVPGIQGFRVPGFQGSRVPGFQGFRVQVSRVP 525


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
            protein Y54G2A.21 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 223  NKRSKERRHLHVILE---RNTFTASPLVTSRLTLGSSEREEEAN*FTSVAEGHELGQSER 393
            N R K+RR++HV+ E   RN      + TS    G S  +   N  TS+A G   G S +
Sbjct: 810  NYRDKKRRYIHVLRELMCRNIMNDMTMNTS--IPGLSIPDFSQNVQTSIAFG---GNSTK 864

Query: 394  LA-RGRPNEQHARRRP 438
            +  RG P+   +R  P
Sbjct: 865  IGFRGLPSNALSRPNP 880


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,873
Number of Sequences: 27780
Number of extensions: 267694
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)