Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4550
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    28   1.6  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   6.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   6.5  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.5  

>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 441 LTLADPADFVVRQSINKIPKLLYKINLNKQKESVR 337
           L+   P DFVVR+ + +I    YK +L+K++ +++
Sbjct: 210 LSKKQPCDFVVREVLVQIVHSFYKAHLDKEEGAMQ 244


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 548 SLMYL*VSYIDYTFSGKCYTASLRTYYVFR 637
           SL++  ++   Y F    Y A L T YVFR
Sbjct: 292 SLLFCGITLKHYAFFNMSYKAKLSTKYVFR 321


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 202 SGPIWLILVLNYLWKSRE 255
           SGPIW +   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 308 ILFFL*CVPRRTDSFCLF 361
           ++FFL  VP+ T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,708
Number of Sequences: 5004
Number of extensions: 57463
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)