Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4550
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916     32   0.55 
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246...    28   6.8  
02_04_0610 + 24335153-24337724,24337835-24338256                       28   6.8  

>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
          Length = 722

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +1

Query: 1   AEIGRLRQRNLPQKYARVRSQSERTVKLEAGFSFLRQEYLRNEKVFEENL 150
           AEI RL+     +  ++V+  +E+T KLEA  S LR + L+  KV EE +
Sbjct: 233 AEINRLKDSFNSELESKVKESAEKTRKLEAETSVLRIK-LKKAKVAEEKV 281


>02_05_1221 -
           35023734-35023868,35024002-35024217,35024349-35024675,
           35024845-35025218,35025560-35025647,35025767-35025910,
           35026053-35026178,35026264-35026412,35026539-35026644,
           35026757-35026900,35027018-35027194,35027304-35027453,
           35027570-35027788
          Length = 784

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   AEIGRLRQRNLPQKYARVRSQSERTVKLEAGFSFLRQE 114
           AEIG L   +L   +    SQ E+ VK  A  SFL  E
Sbjct: 619 AEIGTLPSTSLVPAFPMAISQPEQPVKARAALSFLLSE 656


>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 447  LDHTRSGECINFNTCEIGGT*TLRNFLYMIVNVLHSCTYECPI*ITRLAGSVTRLRSVRT 626
            +D     EC  FN   IG        L  +V V  SCT+  P     +     +L+++RT
Sbjct: 914  IDAQLQEECKGFNQERIGQENRFYKCLLSVVQVALSCTHPIPRERMDIREIAIKLQAIRT 973

Query: 627  TSSE 638
            + +E
Sbjct: 974  SYAE 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,854
Number of Sequences: 37544
Number of extensions: 318334
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)