Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4545
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.46 
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    29   0.46 
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   2.5  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    25   4.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   4.3  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    25   5.7  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   7.5  

>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 464 IPKFCTSFVISRPSKFYSDRLKIRQHHITE 375
           IPKFC+S +I   + +YS  + I +H +T+
Sbjct: 450 IPKFCSSNLILTSAIYYSCLILIHRHSLTK 479


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -2

Query: 309 FYSISNEIVKFVQRYKFFKLFERSGAIVSACESVDISIGLTLGTIVLHRYC-----LREV 145
           F  +SN+IV+    +   KL  R  A+V  C    + IG+ +GT+ +HRY      LR++
Sbjct: 243 FDPLSNKIVE-ESSFTGAKL-RRRYALVQRCRDAGV-IGIVIGTLGVHRYLHVLNQLRKM 299

Query: 144 LLCSVHRTPISWTIGNEN 91
           +L +  + P    +G  N
Sbjct: 300 IL-NAGKKPYMLAVGKLN 316


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
 Frame = +2

Query: 44  ESRNMLRTVL*DSYLLFSFPIVQEMGVR*TLHNKTSLKQYRCNTIVP-----NVRPIEMS 208
           E  N L  +L D      FP   E  V+ T+ N +   +Y+  +++P     NV  + ++
Sbjct: 473 EDYNTLEFILVDKDGNNGFPSDLETLVKYTIKNNSLEIEYK--SVIPEYSKLNVTAVNLT 530

Query: 209 TDSQADTMAPERSKSLKNLYRWTNLTISFEIE*NLPRGHYVKLQH 343
             S  +  +P ++     +   TN+ +    E +LP G  V+ Q+
Sbjct: 531 NHSYWNLASPNKTIDGTIIKSTTNVYLKVNSETSLPTGDIVEWQN 575


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 211 RFAGRHNGARAFKELKELISLDELNDLIRNRIKPTK 318
           R+   +NG RA K+   ++SLD +   +     P K
Sbjct: 12  RYPDGYNGNRAVKKSLSVLSLDNMKSTLSGLFAPLK 47


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 223 RHNGARAFKELKELISLDELNDLIRNRIK 309
           R NG   F ++K  + +DE+ +LI    K
Sbjct: 252 RENGPIVFAQVKNQVGMDEITELILGAAK 280


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 226 VGLRICRHLDWPDIGHNCIAPVLLEGSFVVQ 134
           + L I RH++WP +    +A VL+   F+ Q
Sbjct: 130 IKLGIRRHVEWPVVFMGVLATVLVNIGFLPQ 160


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 90  CFRSLLSRKWECDEHCTTKLPSSSTGAIQL 179
           C   +L+ ++  D+HCTT   + STG + L
Sbjct: 28  CIYQILTDRFALDDHCTT---APSTGRMYL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,006
Number of Sequences: 5004
Number of extensions: 39945
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)