Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4545
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0373 - 17037945-17040641 31 0.35
01_06_0193 - 27359575-27361962 29 1.8
12_02_1279 + 27510605-27513301 28 3.2
04_03_0911 + 20767041-20767047,20767119-20769322 28 3.2
11_01_0673 - 5491694-5493102,5493386-5493995 27 5.6
06_03_1225 + 28538515-28538721,28538799-28539000,28539241-285394... 27 5.6
11_01_0674 - 5502275-5502954,5503054-5504746 27 7.4
06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918... 27 7.4
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 27 7.4
02_04_0426 - 22802143-22802667,22804929-22805129 27 7.4
11_01_0675 - 5508815-5511277 27 9.8
02_01_0414 - 3034037-3034330 27 9.8
>09_04_0373 - 17037945-17040641
Length = 898
Score = 31.5 bits (68), Expect = 0.35
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 252 LFERSGAIVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF R+G ++ E ++++IG G LH C ++++ C V
Sbjct: 625 LFGRTGPVLEWGERMEVAIGAARGLAYLHTGCEQKIVHCDV 665
>01_06_0193 - 27359575-27361962
Length = 795
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 252 LFERSGA--IVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF+ SG ++S + I++G T G LH CL V+ C V
Sbjct: 591 LFDDSGTRNLLSWSQRFKIALGTTRGLAYLHHECLEWVVHCDV 633
>12_02_1279 + 27510605-27513301
Length = 898
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 252 LFERSGAIVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF + A + E + + +G G LH C R++L C V
Sbjct: 641 LFRAAAAPLEWPERMGVCVGAARGLAYLHAGCTRKILHCDV 681
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 252 LFERSGAIVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF SGA++S I++G+ G LH C ++ C +
Sbjct: 522 LFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDI 562
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 252 LFERSGAIVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF +G I+ I+IG+ G LH C + ++ C +
Sbjct: 530 LFHSNGTILDWSTRHQIAIGVARGLFYLHESCHKCIIHCDI 570
>06_03_1225 +
28538515-28538721,28538799-28539000,28539241-28539472,
28539560-28539713,28539792-28540136
Length = 379
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 246 ERSGAIVSACESVDISIGLTLGTIVLHRYCL 154
+R GA+++ + + I GL G + LH++CL
Sbjct: 138 KRKGALLNWSKRLQIIKGLAEGLLYLHKHCL 168
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 252 LFERSGAIVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF +GA++ I+IG+ G LH C ++ C +
Sbjct: 584 LFHSNGAVLDWSTRHQIAIGVARGLSYLHESCHECIIHCDI 624
>06_01_1114 -
9179614-9180167,9180223-9180544,9181524-9181820,
9181991-9182878,9182896-9182941,9182964-9183350,
9183648-9183985
Length = 943
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 187 CQANRDVYRFAGRHN---GARAFKELKELISLDELNDLIRNRIKPTKRTLR*IAAHXKIL 357
C R+ + G +N G + E+ L DL+ + K T + +AA+ K+L
Sbjct: 226 CPETREEAMYMGNNNNGGGTNHAHIINEVTITPSLKDLVFAQAKTTDALSKKLAANDKVL 285
Query: 358 ETKH 369
E K+
Sbjct: 286 ENKN 289
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 87 CCFRSLLSRKWECDEHCTTKLPSSSTGAIQLCPMSGQSRCLQIRRPTQWRQSVQR 251
C FRS L+RK C KL + G + S RC+Q Q R R
Sbjct: 119 CVFRSYLARKALCALRGLVKLQALVRGHLVRRQASNTLRCMQALVAAQHRARAAR 173
>02_04_0426 - 22802143-22802667,22804929-22805129
Length = 241
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 135 CTTKLPSSSTGAIQLCPMSGQSRCLQIRRPTQWR 236
C +LP+SS + P+S C + RPT R
Sbjct: 35 CQARLPTSSPVMPPVTPLSPPPPCFALSRPTYMR 68
>11_01_0675 - 5508815-5511277
Length = 820
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 252 LFERSGAIVSACESVDISIGLTLGTIVLHRYCLREVLLCSV 130
LF +GA++ I+IG+ G LH C ++ C +
Sbjct: 609 LFHSNGAVLDWNTRHQIAIGVARGLSYLHESCRECIIHCDI 649
>02_01_0414 - 3034037-3034330
Length = 97
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 150 EVLLCSVHRTPISWTIGNENNRYESYNTVRSIFLDS 43
+V LCS +WT GN R S + S+FL S
Sbjct: 56 DVTLCSAPCNSTTWTHGNFVARRRSAGCLASLFLPS 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,347
Number of Sequences: 37544
Number of extensions: 246362
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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