Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4545
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    28   3.8  
EF584656-1|ABQ57414.1|  500|Caenorhabditis elegans LAD-2 short i...    27   6.6  
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is...    27   6.6  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    27   6.6  
AC024817-51|AAP68914.1|  496|Caenorhabditis elegans L1 cam adhes...    27   6.6  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    27   6.6  
Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 76  GFIPVVFVPYCPGNGSAMNTAQQNF 150
           G +PV+  P CP NG  + T   NF
Sbjct: 135 GTLPVLTSPSCPQNGQQLPTENNNF 159


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 228 VSACESVDISIGLTLGTIVLHRYCLREVLLCSVHRTPI 115
           V  CE +++   L +   +LHR C    ++CS+   P+
Sbjct: 211 VGPCEGIEMGDQLWVSRYILHRICEDYGVVCSLDPKPV 248


>EF584656-1|ABQ57414.1|  500|Caenorhabditis elegans LAD-2 short
           isoform protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 78  IHTCCFRSLLSRKWECDEHCTTKLPSSSTGAIQLCPMSGQ 197
           +HT   R + +  WE D      LP  STG ++ C   GQ
Sbjct: 318 VHTVNVRVMAAPFWEFDPPRDISLPEESTGELE-CLAGGQ 356


>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
           isoform protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 78  IHTCCFRSLLSRKWECDEHCTTKLPSSSTGAIQLCPMSGQ 197
           +HT   R + +  WE D      LP  STG ++ C   GQ
Sbjct: 318 VHTVNVRVMAAPFWEFDPPRDISLPEESTGELE-CLAGGQ 356


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
           domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 78  IHTCCFRSLLSRKWECDEHCTTKLPSSSTGAIQLCPMSGQ 197
           +HT   R + +  WE D      LP  STG ++ C   GQ
Sbjct: 318 VHTVNVRVMAAPFWEFDPPRDISLPEESTGELE-CLAGGQ 356


>AC024817-51|AAP68914.1|  496|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform b protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 78  IHTCCFRSLLSRKWECDEHCTTKLPSSSTGAIQLCPMSGQ 197
           +HT   R + +  WE D      LP  STG ++ C   GQ
Sbjct: 318 VHTVNVRVMAAPFWEFDPPRDISLPEESTGELE-CLAGGQ 356


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 78  IHTCCFRSLLSRKWECDEHCTTKLPSSSTGAIQLCPMSGQ 197
           +HT   R + +  WE D      LP  STG ++ C   GQ
Sbjct: 318 VHTVNVRVMAAPFWEFDPPRDISLPEESTGELE-CLAGGQ 356


>Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical
           protein C34C12.6 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 2   NERNASILTSRKWTESRNMLRTVL*DSYLLFSF 100
           +E NA +   R W++ +  ++T     YLL  F
Sbjct: 110 DEHNAFLFVERAWSQPKEFIKTFKTSDYLLHCF 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,162,737
Number of Sequences: 27780
Number of extensions: 230800
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)