Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4543
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF272893-1|AAK13257.1|  441|Homo sapiens UBX domain-containing p...    48   3e-05
BC008288-1|AAH08288.1|  388|Homo sapiens UBXD1 protein protein.        36   0.21 
AF272894-1|AAK13258.1|  388|Homo sapiens UBX domain-containing p...    36   0.21 

>AF272893-1|AAK13257.1|  441|Homo sapiens UBX domain-containing
           protein 1 protein.
          Length = 441

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +1

Query: 544 GRGHKLTESTTSSHDSVKKDIPVVK--RSGLSEESKVAAEAALARLNQKRENPGFNTSLA 717
           G G KL ES        K + P  +  R G + E+++AA AALARL QK+      TS  
Sbjct: 18  GPGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAALARLEQKQSRAWGPTSQD 77

Query: 718 AIQAQVRKELENEKASS 768
            I+ QVRKEL+ E   S
Sbjct: 78  TIRNQVRKELQAEATVS 94


>BC008288-1|AAH08288.1|  388|Homo sapiens UBXD1 protein protein.
          Length = 388

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +1

Query: 646 VAAEAALARLNQKRENPGFNTSLAAIQAQVRKELENEKASS 768
           +AA AALARL QK+      TS   I+ QVRKEL+ E   S
Sbjct: 1   MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVS 41


>AF272894-1|AAK13258.1|  388|Homo sapiens UBX domain-containing
           protein 1 protein.
          Length = 388

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +1

Query: 646 VAAEAALARLNQKRENPGFNTSLAAIQAQVRKELENEKASS 768
           +AA AALARL QK+      TS   I+ QVRKEL+ E   S
Sbjct: 1   MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVS 41


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,376,608
Number of Sequences: 237096
Number of extensions: 1615987
Number of successful extensions: 10190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10190
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)