Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4541
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    29   0.48 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   5.9  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   5.9  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    25   5.9  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   7.8  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 304 IMHILPVESIQNIVNDSRRSCVCTTRTQQCMYATHRKKTFRNLRTTS 164
           ++HILP  S ++  N  R   V TT T Q          +++ RT S
Sbjct: 6   VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS 52


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 141 LHLTIYISDVVRKFLNVFLRCVAYIHCCVRVVHTQLRRESL 263
           + LT +  D+ R  +      + Y+H    VVH  ++ E+L
Sbjct: 223 VRLTYFSEDLSRHVITQVAHAIRYLHEDCGVVHRDIKPENL 263


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 212 VCNTSQKDIQKFADDVTYVN 153
           +CN   KDI+KF D + YV+
Sbjct: 162 ICNVRNKDIRKFLDGI-YVS 180


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 212 VCNTSQKDIQKFADDVTYVN 153
           +CN   KDI+KF D + YV+
Sbjct: 162 ICNVRNKDIRKFLDGI-YVS 180


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 255 HAVVVYVQHVRSNVCMQH 202
           HA+V+ VQ   +N C++H
Sbjct: 169 HALVIGVQSATNNACVEH 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,617
Number of Sequences: 5004
Number of extensions: 31490
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)