Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4541
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    30   0.85 
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225...    28   3.4  
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466...    27   6.0  

>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 165 DVVRKFLNVFLRCVAYIHCCVRVVHTQLRRESLTI 269
           D+VR+F    L  VA++H  +R++HT L+ E++ +
Sbjct: 306 DLVREFARQILESVAFMH-DLRLIHTDLKPENILL 339


>01_02_0071 +
           10822008-10822011,10822219-10822364,10822452-10822544,
           10822722-10822781,10822855-10823127,10823229-10823303,
           10823419-10823475,10823593-10823733,10823813-10823863,
           10823905-10823955,10823956-10824051,10824159-10824242,
           10824330-10824432,10824518-10824600
          Length = 438

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 171 VRKFLNVFLRCVAYIHCCVRVVHTQLRRESLTI 269
           V+ ++    R +AYIH CV V H  ++ +++ +
Sbjct: 186 VKLYMYQICRALAYIHNCVGVCHRDIKPQNILV 218


>09_04_0574 +
           18645363-18645870,18645995-18646491,18646631-18646696,
           18646921-18646989,18647401-18647466
          Length = 401

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 316 LSVSIMHILPVESIQNIVNDSRRSCVCTTRTQQ 218
           L +++ +I  ++    ++NDSR SC C+   Q+
Sbjct: 365 LDLAVDYIKELQKQVKVLNDSRSSCTCSASKQK 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,933,567
Number of Sequences: 37544
Number of extensions: 167411
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)