Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4541
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U40798-1|AAK84561.1|  155|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    27   9.3  

>Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical
           protein ZC504.1 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 243 VYVQHVRSNVCMQHIAKRHSEICGRRHLCKS*GVNGF 133
           V   HVRSN  M+     +S++C   ++C + G++ F
Sbjct: 111 VSFSHVRSNQPMRCNPSAYSDVCPADYVCTTQGLHSF 147


>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  WTFTYVIICDSSSTTLLSIAGSRKPFTP 148
           WT+T   +CDSS    +++  SR  F+P
Sbjct: 120 WTWTKYFVCDSSDLVKVNLPSSRN-FSP 146


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  WTFTYVIICDSSSTTLLSIAGSRKPFTP 148
           WT+T   +CDSS    +++  SR  F+P
Sbjct: 128 WTWTKYFVCDSSDLVKVNLPSSRN-FSP 154


>U40798-1|AAK84561.1|  155|Caenorhabditis elegans Hypothetical
           protein R13A1.5 protein.
          Length = 155

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 197 QKDIQKFADDVTYVNREV 144
           Q DIQK +D+V YV+R++
Sbjct: 85  QMDIQKISDEVGYVSRQI 102


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
            protein F56H1.3 protein.
          Length = 1174

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 213  IHCCVRVVHTQLRRESLTIFCMLSTGRICIMET 311
            +H  VR  HT   + S T  C++ T    I+ET
Sbjct: 966  LHVAVRKAHTSDEQMSTTTHCVVKTNENGILET 998


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 65  WTFTYVIICDSSSTTLL-SIAGSRKPFTPHDLHK*RRPQISECL 193
           W FT  I+C SS  +LL S +  RK F P    K R+  IS  L
Sbjct: 275 WFFTTEIMCISSPWSLLVSSSKLRKEFIPKRCRK-RQENISSML 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,392,255
Number of Sequences: 27780
Number of extensions: 174936
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)