Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4539
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.31
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 2.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.1
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 6.7
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.9
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 8.9
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 8.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.31
Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Frame = +1
Query: 13 SSPMTPPSTTRVGRRRCFIDDFRPQLPPWDS---------GSGSGASTLTPRKAQRCSSK 165
S P PP ++RV + RP PP S G+GS S+L P S+
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 166 GVALRTPR*ASLSRLGASTPPPPPFAQSRCT---TSPYRGPRR-SNI*ASPSTVG*HSAP 333
++ P G S PPPPP + T P R SN A P + SAP
Sbjct: 348 AGSIPLPP------QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 290 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 195
F+L Y L +W GG GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 338 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 234
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 174 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 305
PP + + P PT NTPA T+ IP P V +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 108 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 203
F+ W+ P+ S +L ++G PP + LS L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 134 PHEKHSGALQKGSPSEHHAEHPSPD 208
PHEKH L++ S + H E S D
Sbjct: 163 PHEKHFRPLRQRSSVDDHQEFESED 187
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 476 YTCIGHDGAYASFVECHLISKGHFTSP 396
Y +G DG Y S EC S+ FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 180 NTTLSIPLPTRRVNTPAPAVRP 245
N T S PLPT N P P P
Sbjct: 172 NYTASSPLPTASANAPLPVPPP 193
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 217 STPPPPPFAQSRCTTSPYRGPRRSNI 294
+T PPPP + + T +GPR + I
Sbjct: 22 ATGPPPPIPKIKIKTREPKGPRLTKI 47
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 156 LFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 326
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 327 RPHIKTVRDR 356
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 144 STAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 245
ST +L K+ RP PLP + P+ VRP
Sbjct: 382 STGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,709
Number of Sequences: 5004
Number of extensions: 74747
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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