Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4537
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 30 0.20
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.35
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.3
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 25 5.7
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 7.5
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 7.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 7.5
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 25 7.5
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.9
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 30.3 bits (65), Expect = 0.20
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 197 CRSRST*RCPYLNPTR-STSQWSNLSMYLFIRVSTKLLKN 313
C ST CPYL PT NL ++L++R+S + N
Sbjct: 404 CNPASTILCPYLFPTNVRMESLINLELFLYLRLSQNDIDN 443
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 29.5 bits (63), Expect = 0.35
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 181 PHPVAVSVPQYVKVPIPQPYPVHVTVEQPIHVPVYK 288
P PVAV Q + I Q P+HV+ +P P+ K
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKPPKPPLRK 313
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 148 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 243
V +++ +G P H ++V P YV +P P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 175 PIPHPVAVSVPQYVKVPIPQPYPVHV 252
P P P AV VP PIP P P +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 13 EPQ*GNMIAFKTTXXXXXXXXXXXRPFEEWEPEGHTHTEHTKPYHVT 153
E Q G +AF +T R EEW PE E + YH T
Sbjct: 282 EGQMGKALAFASTHPSSKKRI---RKIEEWLPEAQVKRETSDCYHET 325
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 282 NRYMDRLLHCDVDRVGLRYGHLHVLRDRHSHRMGNRNSDLLH 157
N+Y ++L + LR G +H L H ++ L+H
Sbjct: 201 NKYDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGRTLVH 242
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 330 DRVRYWFFNNLVDTLINRYMDRLLHCDVDRVGLRY 226
D+V YW + V L++R ++R+ C + + +Y
Sbjct: 24 DKVFYWSQIHKVRKLVDRSIERMESCSIINIITKY 58
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 136 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQ-PYPVHVTVEQPIHVPV 282
+P + P+P +A+ P Y P+ Q YPV+ P +V V
Sbjct: 8 QPISTPSASVVTAPLPATIALPSPNYYYPPVAQGHYPVNNMWSLPSNVRV 57
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 432 HGYMDGIGLRDGHLYFFFDLNGI 364
H +DG L DG + +FF + GI
Sbjct: 14 HFGIDGCSLADGDIDYFFTVTGI 36
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 250 RGPGRVEVWAPSRTAG 203
+G GRVE+W +RT G
Sbjct: 191 KGNGRVEIWFGARTPG 206
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 118 THTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVP 225
+ T+H +P + T ++ P AV+ PQ V+ P
Sbjct: 315 SETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 224 PYLNPTRSTSQWSNLS 271
P+LN S S+WSN+S
Sbjct: 352 PHLNDESSRSRWSNIS 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,717
Number of Sequences: 5004
Number of extensions: 49774
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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