Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4534
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.61 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 45  QALPRQGARAPALPSREAR----PLPRQGSSAPTLPRGETRAIPRR 170
           Q  P  GA  P +P+        PLP    S PT+P   + A P R
Sbjct: 408 QLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIR 453


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 15   SALSRTRTS*QALPRQGARAPALPSR 92
            +A + +R+  Q++PRQ  R   +PS+
Sbjct: 1768 NASAHSRSGSQSMPRQNGRYSRVPSQ 1793


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 321 SGLPRPCSC 347
           SGLP PC C
Sbjct: 473 SGLPEPCRC 481


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 321 SGLPRPCSC 347
           SGLP PC C
Sbjct: 473 SGLPEPCRC 481


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 204 CEARRCPRQGARRQALPRACACSLPRREASA 296
           C  ++C   G R + +     C++ R+E  A
Sbjct: 39  CRLKKCLTVGMRPECMVPEYQCAVKRKEKKA 69


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 204 CEARRCPRQGARRQALPRACACSLPRREASA 296
           C  ++C   G R + +     C++ R+E  A
Sbjct: 242 CRLKKCLTVGMRPECVVPEYQCAVKRKEEKA 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,757
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)