Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4533
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 204 HYYFSPQQRFSSLTPPQL 257
           H++ SP Q  SS  P Q+
Sbjct: 630 HFHQSPSQNHSSAVPDQM 647


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 323 DTKFQVNQMHG 355
           +T FQVNQ HG
Sbjct: 688 NTHFQVNQSHG 698


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +2

Query: 101 IGSLQ--AYRFQCCSGFT 148
           IG+ Q  A++ QCC GFT
Sbjct: 798 IGNSQSLAHQDQCCPGFT 815


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 293 YPLSTCIFYMDT 328
           YPL+ C++Y  T
Sbjct: 298 YPLTGCLYYFST 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,733
Number of Sequences: 438
Number of extensions: 4402
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)