Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4532
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 32 0.43
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 31 1.00
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 31 1.00
06_03_0830 + 25159758-25162460 29 2.3
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 29 3.0
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 29 4.0
04_03_0232 - 13049649-13052807 28 7.0
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 7.0
04_04_0480 - 25537068-25537221,25537359-25537484,25537593-255376... 27 9.3
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 31.9 bits (69), Expect = 0.43
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -3
Query: 300 CHHLPHLSMILYKSCSAALGRLLAVSHSNNENCSQQFSQHQISLLLAEHSPQKMHKL*ME 121
CH L + + K C GR+L +SN ++ + S+HQ + AE P++ +L
Sbjct: 87 CHRLNPVQYL--KDCKRLYGRIL--DNSNVQSSIRAESKHQSEKVWAEQYPKEPFELEYT 142
Query: 120 LGPPFSIYINALAVK 76
SIY NA A +
Sbjct: 143 SSSDNSIYANAGAAE 157
>04_04_1323 +
32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 96 YKSKMEDQVPFKVYAFFE-ENAQPEVRRFGVEKTVVSSFHYLN 221
Y SKM+ +V F+VY+ + + A+ +FG ++ +++ +Y+N
Sbjct: 249 YSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYIN 291
>02_02_0188 +
7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 39 VVTPVLIRVICVILRPV-HLYKSKMEDQVPFK 131
V P+++ VIC+I+ + + K KM+D PFK
Sbjct: 482 VGAPIIVAVICIIILIIRRIMKRKMDDDDPFK 513
>06_03_0830 + 25159758-25162460
Length = 900
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 369 NVHCKNPDIRDDDCEIEITATTMVPENTDGNTAVHSG 479
+V N +D+C+I + M+P N+DGN + G
Sbjct: 198 SVPLPNHSQTNDNCDIVKQSLVMIPPNSDGNAIIGDG 234
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 261 SCSAALGRLLAVSHSNNENC-SQQFSQHQISLLLAEHSPQKMHKL*MEL 118
SCS AL RL A HS E S + + ++ + A+ P+ +H L + L
Sbjct: 349 SCSGALNRLRATLHSTEERLQSHKKETNYLAQVAAKSLPKGLHCLPLRL 397
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 372 VHCKNPDIRDDDCEIEITATTMVPENTDGNTAVHSGVVCNVCNSP 506
VHC +P + D E+E + T T VHS +V NSP
Sbjct: 892 VHCDSP-VDDSKKEVESCCVEIPGNVTQKQTGVHSPMVDEKSNSP 935
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 464 GSS*RSRLQCMQLSSCGFSVTSAQFV 541
G S RSRL+ + LS C FS +S F+
Sbjct: 344 GHSNRSRLRVLHLSQCTFSFSSPPFL 369
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 375 HCKNPDIRDDDCEIEITATTMVPENTDGNTAVHSG 479
+C N ++ D+ E +AT++ P TDG VH G
Sbjct: 868 NCINHALQTDNLETSSSATSLCPSRTDG--LVHQG 900
>04_04_0480 -
25537068-25537221,25537359-25537484,25537593-25537687,
25537791-25537876,25538128-25538277,25538379-25538502
Length = 244
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 443 WD-HGSRSYLYFTVIISNIWILAVNVELNQPTL 348
W+ +G L F VI+S +A+NV L+ PTL
Sbjct: 87 WETYGGLRELGFNVIVSFFLAIAINVGLSYPTL 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,574
Number of Sequences: 37544
Number of extensions: 367359
Number of successful extensions: 926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -