Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4532
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 35 0.055
U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical pr... 34 0.096
U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 32 0.29
L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 32 0.29
AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.6
Z75550-6|CAA99930.1| 591|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical pr... 28 4.8
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 28 4.8
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 28 4.8
U64600-2|AAK39200.2| 519|Caenorhabditis elegans Twik family of ... 27 8.4
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 27 8.4
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 27 8.4
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 511 WVFRYKCAICHDYHLCSSARPPGITMNTAWXRL 609
W RYKC IC DY LC + N A R+
Sbjct: 461 WNNRYKCTICADYDLCRQCEAKNLHANHAMLRI 493
>U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical
protein C06G3.6 protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.096
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 520 RYKCAICHDYHLCSSARPPGITMNTAWXRL 609
R+KCAIC++Y LC + G+ A RL
Sbjct: 207 RFKCAICYNYDLCETCEAAGVHAQHALIRL 236
>U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of
certain neuronsprotein 1 protein.
Length = 778
Score = 32.3 bits (70), Expect = 0.29
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 502 LQLWVFRYKCAICHDYHLCSSARPPGITMNTAW 600
+ +W + ++C +CHD C S P G T + W
Sbjct: 273 ISVW-YDHECPLCHDDGYCESTLPSGTTSSDKW 304
>L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein.
Length = 778
Score = 32.3 bits (70), Expect = 0.29
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 502 LQLWVFRYKCAICHDYHLCSSARPPGITMNTAW 600
+ +W + ++C +CHD C S P G T + W
Sbjct: 273 ISVW-YDHECPLCHDDGYCESTLPSGTTSSDKW 304
>AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical
protein Y32B12A.1 protein.
Length = 177
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 520 RYKCAICHDYHLCSS 564
R+KC IC DY +CSS
Sbjct: 146 RFKCTICTDYDICSS 160
>Z75550-6|CAA99930.1| 591|Caenorhabditis elegans Hypothetical
protein T22C1.8 protein.
Length = 591
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 600 PCSVHCDSRRPRTGAQVVVMTNCALVTENPQLESCIHCKRLR 475
P +VHC + RTG V + ++T+ +L+ C+ LR
Sbjct: 313 PVTVHCSAGIGRTGTFVAIEACLQILTDGKELDLLGTCRALR 354
>Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical
protein R07B7.13 protein.
Length = 410
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 387 PDIRDDDCEIEITATTMVPENTDGNTAVHSGVVCNVCNSPVVGFPLQV 530
PDI+ D+ E T+ + E T+ + C VC +P VG+ V
Sbjct: 10 PDIKVDERYCESTSNSQQSEITNETSRNVLPEKCEVCGNPAVGYHYDV 57
>Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical
protein T26H2.5 protein.
Length = 229
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 520 RYKCAICHDYHLCSSARPPGITMNTAWXRL 609
RYKC +C D+ +C + + A R+
Sbjct: 157 RYKCTMCADFDICERCEAKSVHLQHAMLRI 186
>Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 264 KSCSAALGRLLAVSHSNNENCSQQFSQHQISLLLAEHSP 148
++ S A+ R L +SH NN N + + Q + L + E SP
Sbjct: 18 RTFSKAMNRRLTISHKNNNNMNNK--QKMVQLDIREPSP 54
>Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 264 KSCSAALGRLLAVSHSNNENCSQQFSQHQISLLLAEHSP 148
++ S A+ R L +SH NN N + + Q + L + E SP
Sbjct: 18 RTFSKAMNRRLTISHKNNNNMNNK--QKMVQLDIREPSP 54
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 517 FRYKCAICHDYHLCSS 564
FRYKC C +Y LC S
Sbjct: 275 FRYKCQRCANYQLCQS 290
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 517 FRYKCAICHDYHLCSS 564
FRYKC C +Y LC S
Sbjct: 275 FRYKCQRCANYQLCQS 290
>U64600-2|AAK39200.2| 519|Caenorhabditis elegans Twik family of
potassium channelsprotein 26 protein.
Length = 519
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 69 CVILRPVHLYKSKMEDQVPFKVYAFFEENAQPEVRRFGVEKTVVSSF 209
C++L+ + + SK+ED PF + F+E E R+ + K ++ F
Sbjct: 27 CIVLK-IDTHMSKVEDMSPFGFHFEFDEKKYKE-RKKQIRKQKITRF 71
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 628 RDMSGGGDGPMQCSL*FPAASHW--STSG 548
RD SGGG G M+ FP ASH+ TSG
Sbjct: 1338 RDRSGGGGGSMRGG--FPPASHYHGGTSG 1364
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 628 RDMSGGGDGPMQCSL*FPAASHW--STSG 548
RD SGGG G M+ FP ASH+ TSG
Sbjct: 1338 RDRSGGGGGSMRGG--FPPASHYHGGTSG 1364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,582
Number of Sequences: 27780
Number of extensions: 328051
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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