Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4531
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0203 + 12986685-12988691                                         30   2.3  
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001...    28   7.0  
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798           28   9.3  

>06_02_0203 + 12986685-12988691
          Length = 668

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 58  YASAGAILSHLAYGVNPGDAQAAAIDATGRSPGHRPRHQRG 180
           Y + GA +   AY +   DA AA + A G++P H  RH  G
Sbjct: 329 YQNVGAAMRCCAYCI---DALAACVGAGGQAPAHVKRHLAG 366


>07_03_0535 -
           19198130-19198139,19199901-19199995,19200095-19200154,
           19200241-19200349,19200438-19200604,19200694-19200813,
           19200901-19200987,19201068-19201196,19201284-19201362,
           19201451-19201530,19201646-19201726,19201812-19201874,
           19201963-19202139,19202381-19202476,19202610-19202729,
           19202825-19202933,19203016-19203235,19203320-19203405,
           19203491-19203552,19203649-19203685,19203790-19203848,
           19203952-19204037,19204142-19204313
          Length = 767

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -1

Query: 706 KRHPGIRENTDR*PMLPEPDRRPARRCQLLKHLIVDKADRATLFNNICY*KKACY 542
           K HP ++E  D  P LPE +R+P    Q LK  + ++A + + F+N+   K+  Y
Sbjct: 670 KAHPIMKE--DPIP-LPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITY 721


>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
          Length = 244

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 GRCPGLRPVASMAAACA 114
           GRCP L   A++AAACA
Sbjct: 35  GRCPPLEDAATVAAACA 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,724
Number of Sequences: 37544
Number of extensions: 238641
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)