Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4530
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      27   2.0  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   4.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.2  

>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 245 YTEIRLFDSEIRSSYDSREATLT*RHGCVFPHCTT 141
           Y++  LFD EI++    +E+  T R   + P C T
Sbjct: 112 YSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKT 146


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 175 HVSVASLLSYEDRISLSNRRISV*ILLLNVLFFQIERTH 291
           + +  S L    R++L N+R+ V   LL++L  QI  TH
Sbjct: 313 YTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITHTH 351


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -2

Query: 289  EYVQFEKIKHLRVIFIQKYVYSIVRYD 209
            E  ++E ++H+RV  + +++Y ++ YD
Sbjct: 1870 ENSKWESLRHVRVNRVGEHIYPLISYD 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,393
Number of Sequences: 5004
Number of extensions: 50778
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)