Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4528
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    27   2.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   3.8  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   6.7  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   8.9  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 517 NGNFIP*LLLSH*LINYKSNRLSYNKC-----VRS*NFDCKIIGN 398
           N   IP ++++  LINY+SN++   K      V    + CK +GN
Sbjct: 242 NNELIPAIIVARNLINYESNQMDAVKLISDTFVEPYQYHCKQLGN 286


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 265  TGLIQQQPTNQHKQTLLTSLTPHPIFTFYRY 173
            T L+ + P+N +    L  L PH ++T+ +Y
Sbjct: 1524 TYLMGRDPSNAYPLDSLKLLNPHVVYTYLKY 1554


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 247 QPTNQHKQTLLTSLTPHPIFTFYRY 173
           +PT  H   LL  L   PIF FY Y
Sbjct: 152 RPTLYHAAVLLNLLLLPPIFHFYSY 176


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 234 WLVGCCCISPVLVA 275
           W++GC C+ PV ++
Sbjct: 86  WIIGCICLIPVSIS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,670
Number of Sequences: 5004
Number of extensions: 39846
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)