Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4528
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -3

Query: 128 YTLVTSLIPTLGIIS*YIPKNIITA 54
           YT+  +L+P +G+   ++P+  +T+
Sbjct: 172 YTIPWALMPVMGVWGRFVPEGFLTS 196


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 247 QPTNQHKQTLLTSLTP 200
           QP + HKQT +   TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 247 QPTNQHKQTLLTSLTP 200
           QP + HKQT +   TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 93  NYFIIYT*KYNHGTSIPPT 37
           NY+I +  K  +G  +PPT
Sbjct: 144 NYYIWHPGKIVNGKRVPPT 162


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 593 IFFFWWIFNGA 625
           +FF+W I+N A
Sbjct: 264 LFFYWRIYNAA 274


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 93  NYFIIYT*KYNHGTSIPPT 37
           NY+I +  K  +G  +PPT
Sbjct: 144 NYYIWHPGKIVNGKRVPPT 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,442
Number of Sequences: 438
Number of extensions: 3060
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)